Detail Information

Basic Information:


  VIRBase ID:  

HHID00092435

  Virus:  

Influenza A virus (A/Puerto Rico/8/1934(H1N1))

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-153-5p:           RICTOR:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-153-5p RICTOR
miRBase
Accession/Entrez ID		 MIMAT0026480 253260
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - AVO3//hAVO3//PIA

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-153-5p
rs763202408 chr7:157574396    A/G
rs775478941 chr7:157574390    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RICTOR
chr5:38979325(-) A-I      intronic
chr5:38980800(-) A-I      intronic
chr5:38979324(-) A-I      intronic
chr5:38969246(-) A-I      intronic
chr5:38969241(-) A-I      intronic
chr5:38969240(-) A-I      intronic
chr5:38969213(-) A-I      intronic
chr5:38969210(-) A-I      intronic
chr5:39051851(-) A-I      intronic
chr5:39056230(-) A-I      intronic
chr5:38968731(-) A-I      intronic
chr5:38968712(-) A-I      intronic
chr5:38968625(-) A-I      intronic
chr5:38968700(-) A-I      intronic
chr5:38980902(-) A-I      intronic
chr5:39051744(-) A-I      intronic
chr5:38983980(-) A-I      intronic
chr5:38979349(-) A-I      intronic
chr5:38968657(-) A-I      intronic
chr5:38980808(-) A-I      intronic
chr5:38968629(-) A-I      intronic
chr5:38979335(-) A-I      intronic
chr5:38983955(-) A-I      intronic
chr5:39069745(-) A-I      intronic
chr5:38983821(-) A-I      intronic
chr5:38983809(-) A-I      intronic
chr5:38980915(-) A-I      intronic
chr5:38969243(-) A-I      intronic
chr5:38980886(-) A-I      intronic
chr5:38968757(-) A-I      intronic
chr5:38968628(-) A-I      intronic
chr5:38985142(-) A-I      intronic
chr5:38968718(-) A-I      intronic
chr5:38984021(-) A-I      intronic
chr5:38968796(-) A-I      intronic
chr5:38969169(-) A-I      intronic
chr5:38983985(-) A-I      intronic
chr5:38969177(-) A-I      intronic
chr5:38968685(-) A-I      intronic
chr5:38968728(-) A-I      intronic
chr5:39052258(-) A-I      intronic
chr5:38968809(-) A-I      intronic
chr5:38998866(-) A-I      intronic
chr5:39050603(-) A-I      intronic
chr5:38983945(-) A-I      intronic
chr5:38985993(-) A-I      intronic
chr5:38968839(-) A-I      intronic
chr5:38968643(-) A-I      intronic
chr5:38985027(-) A-I      intronic
chr5:38984004(-) A-I      intronic
chr5:38986044(-) A-I      intronic
chr5:38969248(-) A-I      intronic
chr5:38985977(-) A-I      intronic
chr5:38984042(-) A-I      intronic
chr5:38942628(-) A-I      intronic
chr5:38969197(-) A-I      intronic
chr5:38979368(-) A-I      intronic
chr5:38985935(-) A-I      intronic
chr5:38968684(-) A-I      intronic
chr5:38968649(-) A-I      intronic
chr5:38983831(-) A-I      intronic
chr5:38984053(-) A-I      intronic
chr5:38980934(-) A-I      intronic
chr5:38985104(-) A-I      intronic
chr5:38985074(-) A-I      intronic
chr5:38968674(-) A-I      intronic
chr5:38968696(-) A-I      intronic
chr5:38968758(-) A-I      intronic
chr5:38968716(-) A-I      intronic
chr5:38968771(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RICTOR
chr5:38969903(-) A-I intron -    15342557
chr5:38969964(-) A-I intron -    15342557
chr5:38971571(-) A-I intron -    15342557
chr5:38971572(-) A-I intron -    15342557
chr5:38971596(-) A-I intron -    15342557
chr5:38971599(-) A-I intron -    15342557
chr5:38971612(-) A-I intron -    15342557
chr5:38971648(-) A-I intron -    15342557
chr5:38971703(-) A-I intron -    15342557
chr5:38968628(-) A-I intron -    21960545
chr5:38980886(-) A-I intron -    21960545
chr5:38968628(-) A-G intron -    22484847
chr5:38968643(-) A-G intron -    22484847
chr5:38968649(-) A-G intron -    22484847
chr5:38968684(-) A-G intron -    22484847
chr5:38968696(-) A-G intron -    22484847
chr5:38968716(-) A-G intron -    22484847
chr5:38968718(-) A-G intron -    22484847
chr5:38968724(-) A-G intron -    22484847
chr5:38968728(-) A-G intron -    22484847
chr5:38968788(-) A-G intron -    22484847
chr5:38968796(-) A-G intron -    22484847
chr5:38968809(-) A-G intron -    22484847
chr5:38969909(-) A-G intron -    22484847
chr5:38969964(-) A-G intron -    22484847
chr5:38969971(-) A-G intron -    22484847
chr5:38977718(-) C-A intron -    22484847
chr5:38979344(-) A-G intron -    22484847
chr5:38980886(-) A-G intron -    22484847
chr5:38980934(-) A-G intron -    22484847
chr5:38983831(-) A-G intron -    22484847
chr5:38983967(-) A-G intron -    22484847
chr5:38983985(-) A-G intron -    22484847
chr5:38984053(-) A-G intron -    22484847
chr5:38985935(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RICTOR
chr5:38940438-38940439(-) m6A 3'UTR       27773535
chr5:38940451-38940452(-) m6A 3'UTR       27773535
chr5:38941714-38941715(-) m6A 3'UTR       27773535
chr5:38941781-38941782(-) m6A 3'UTR       24284625//27773535
chr5:38941808-38941809(-) m6A 3'UTR       24284625//27773535//22608085
chr5:38941899-38941900(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr5:38942075-38942076(-) m6A 3'UTR       24284625//27773535//22608085
chr5:38942232-38942233(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:38942254-38942255(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:38942263-38942264(-) m6A 3'UTR       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:38942308-38942309(-) m6A 3'UTR       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:38949944-38949945(-) m6A 3'UTR//CDS       27773535
chr5:38950153-38950154(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:38950162-38950163(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr5:38950197-38950198(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:38950203-38950204(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:38950231-38950232(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:38950281-38950282(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:38950437-38950438(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr5:38950468-38950469(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr5:38950483-38950484(-) m6A 3'UTR//CDS       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr5:38950552-38950553(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr5:38950573-38950574(-) m6A 3'UTR//CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr5:38950625-38950626(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr5:38950673-38950674(-) m6A 3'UTR//CDS       24284625//24981863//27773535//22608085
chr5:38950718-38950719(-) m6A 3'UTR//CDS       24981863//27773535//22608085
chr5:38952328-38952329(-) m6A 3'UTR//CDS       24981863
chr5:38981022-38981023(-) m6A exon//intron       27773535
chr5:38981085-38981086(-) m6A exon//intron       27773535
chr5:39074444-39074445(-) m6A CDS//exon       24981863
chr5:39074488-39074489(-) m6A 5'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-153-5p
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Jurkat-derived T cell line (J77cl20)     21505438
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
Nucleus Nasopharyngeal carcinoma cells     20498841
RICTOR
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-153-5p
Doxorubicin 31703       30395908

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-153-5p
Interactor2: RICTOR

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence DIANA
Support Database ViRBase

References:


PMID 31985023 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description In the predication analysis, NEAT1 targeted 144 mRNAs through miRNAs (Table III).

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