Detail Information

Basic Information:


  VIRBase ID:  

HHID00092275

  Virus:  

Influenza A virus (A/Puerto Rico/8/1934(H1N1))

  Host:  

Homo sapiens

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-30a-3p:           BECN1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-30a-3p BECN1
miRBase
Accession/Entrez ID		 MIMAT0000088 8678
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ATG6//beclin1//VPS30

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-30a-3p
rs149150037 chr6:71403567    G/A
rs149150037 chr6:71403567    G/C
rs370184894 chr6:71403566    C/A
rs370184894 chr6:71403566    C/T
rs552541514 chr6:71403558    C/G
rs745605208 chr6:71403563    ATCCG/A
rs746505574 chr6:71403557    G/A
rs746505574 chr6:71403557    G/T
rs746965145 chr6:71403554    GCT/G
rs750918072 chr6:71403564    T/C
rs765735953 chr6:71403560    A/T
rs770865356 chr6:71403559    A/AC
rs776574456 chr6:71403560    A/AAGCTGGAGT
rs368070339 chr6:71403571    G/A
rs769702885 chr6:71403570    TG/T
rs775921090 chr6:71403574    AGCC/A
rs781617967 chr6:71403573    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BECN1
chr17:40965497(-) A-I      intronic
chr17:40965096(-) A-I      intronic
chr17:40964950(-) A-I      intronic
chr17:40964949(-) A-I      intronic
chr17:40964938(-) A-I      intronic
chr17:40964550(-) A-I      intronic
chr17:40964488(-) A-I      intronic
chr17:40964319(-) A-I      intronic
chr17:40964302(-) A-I      intronic
chr17:40964240(-) A-I      intronic
chr17:40964237(-) A-I      intronic
chr17:40964159(-) A-I      intronic
chr17:40974109(-) A-I      intronic
chr17:40975333(-) A-I      intronic
chr17:40975325(-) A-I      intronic
chr17:40975284(-) A-I      intronic
chr17:40974836(-) A-I      intronic
chr17:40974783(-) A-I      intronic
chr17:40974097(-) A-I      intronic
chr17:40973294(-) A-I      intronic
chr17:40973180(-) A-I      intronic
chr17:40973174(-) A-I      intronic
chr17:40973163(-) A-I      intronic
chr17:40969862(-) A-I      intronic
chr17:40969848(-) A-I      intronic
chr17:40969834(-) A-I      intronic
chr17:40965129(-) A-I      intronic
chr17:40964717(-) A-I      intronic
chr17:40968905(-) A-I      intronic
chr17:40965112(-) A-I      intronic
chr17:40973328(-) A-I      intronic
chr17:40968631(-) A-I      intronic
chr17:40973980(-) A-I      intronic
chr17:40964315(-) A-I      intronic
chr17:40969639(-) A-I      intronic
chr17:40975437(-) A-I      intronic
chr17:40969291(-) A-I      intronic
chr17:40968912(-) A-I      intronic
chr17:40964198(-) A-I      intronic
chr17:40973257(-) A-I      intronic
chr17:40964290(-) A-I      intronic
chr17:40969204(-) A-I      intronic
chr17:40964358(-) A-I      intronic
chr17:40964345(-) A-I      intronic
chr17:40965510(-) A-I      intronic
chr17:40969684(-) A-I      intronic
chr17:40964254(-) A-I      intronic
chr17:40975401(-) A-I      intronic
chr17:40974206(-) A-I      intronic
chr17:40968452(-) A-I      intronic
chr17:40975421(-) A-I      intronic
chr17:40965135(-) A-I      intronic
chr17:40969800(-) A-I      intronic
chr17:40973345(-) A-I      intronic
chr17:40964158(-) A-I      intronic
chr17:40973968(-) A-I      intronic
chr17:40975544(-) A-I      intronic
chr17:40973981(-) A-I      intronic
chr17:40974139(-) A-I      intronic
chr17:40964513(-) A-I      intronic
chr17:40974876(-) A-I      intronic
chr17:40964964(-) A-I      intronic
chr17:40973261(-) A-I      intronic
chr17:40964475(-) A-I      intronic
chr17:40964677(-) A-I      intronic
chr17:40964547(-) A-I      intronic
chr17:40965302(-) A-I      intronic
chr17:40969840(-) A-I      intronic
chr17:40964191(-) A-I      intronic
chr17:40965134(-) A-I      intronic
chr17:40969664(-) A-I      intronic
chr17:40964137(-) A-I      intronic
chr17:40965548(-) A-I      intronic
chr17:40973258(-) A-I      intronic
chr17:40973990(-) A-I      intronic
chr17:40964619(-) A-I      intronic
chr17:40965442(-) A-I      intronic
chr17:40974121(-) A-I      intronic
chr17:40975452(-) A-I      intronic
chr17:40974043(-) A-I      intronic
chr17:40975051(-) A-I      intronic
chr17:40968453(-) A-I      intronic
chr17:40964487(-) A-I      intronic
chr17:40974679(-) A-I      intronic
chr17:40964682(-) A-I      intronic
chr17:40964270(-) A-I      intronic
chr17:40970662(-) A-I      NonSyn:Thr->Ala
chr17:40965227(-) A-I      intronic
chr17:40974878(-) A-I      intronic
chr17:40964206(-) A-I      intronic
chr17:40974058(-) A-I      intronic
chr17:40973192(-) A-I      intronic
chr17:40965371(-) A-I      intronic
chr17:40964199(-) A-I      intronic
chr17:40969810(-) A-I      intronic
chr17:40965001(-) A-I      intronic
chr17:40964663(-) A-I      intronic
chr17:40975455(-) A-I      intronic
chr17:40964220(-) A-I      intronic
chr17:40974055(-) A-I      intronic
chr17:40964961(-) A-I      intronic
chr17:40969839(-) A-I      intronic
chr17:40964278(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED BECN1
chr17:40964146(-) A-I intron -    15342557
chr17:40964158(-) A-I intron -    15342557
chr17:40964191(-) A-I intron -    15342557
chr17:40964198(-) A-I intron -    15342557
chr17:40964199(-) A-I intron -    15342557
chr17:40964206(-) A-I intron -    15342557
chr17:40964220(-) A-I intron -    15342557
chr17:40964270(-) A-I intron -    15342557
chr17:40964278(-) A-I intron -    15342557
chr17:40964315(-) A-I intron -    15342557
chr17:40964345(-) A-I intron -    15342557
chr17:40964358(-) A-I intron -    15342557
chr17:40964363(-) A-I intron -    15342557
chr17:40964475(-) A-I intron -    15342557
chr17:40964487(-) A-I intron -    15342557
chr17:40964513(-) A-I intron -    15342557
chr17:40964547(-) A-I intron -    15342557
chr17:40964677(-) A-I intron -    15342557
chr17:40964717(-) A-I intron -    15342557
chr17:40970662(-) A-I exon CDS    15342557
chr17:40971402(-) A-I intron -    15342557
chr17:40964137(-) A-G intron -    22484847
chr17:40964220(-) A-G intron -    22484847
chr17:40964547(-) A-G intron -    22484847
chr17:40969684(-) A-G intron -    22484847
chr17:40969810(-) A-G intron -    22484847
chr17:40969839(-) A-G intron -    22484847
chr17:40973328(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BECN1
chr17:40962515-40962516(-) m6A 3'UTR//exon       24981863//26404942
chr17:40962543-40962544(-) m6A 3'UTR//exon       24981863//26404942
chr17:40962687-40962688(-) m6A 3'UTR//exon       27773535
chr17:40962719-40962720(-) m6A 3'UTR//exon       27773535
chr17:40962854-40962855(-) m6A 3'UTR//CDS//exon       26404942//27773535
chr17:40962881-40962882(-) m6A 3'UTR//CDS//exon       26404942//27773535
chr17:40962916-40962917(-) m6A 3'UTR//CDS//exon       27773535
chr17:40963694-40963695(-) m6A 3'UTR//CDS//exon//intron       27773535
chr17:40963735-40963736(-) m6A 3'UTR//CDS//exon//intron       27773535
chr17:40963771-40963772(-) m6A 3'UTR//CDS//exon//intron       27773535
chr17:40967692-40967693(-) m6A exon//intron       27773535
chr17:40968000-40968001(-) m6A CDS//exon//intron       -
chr17:40970258-40970259(-) m6A CDS//exon       24981863//28052920//26404942//27371828
chr17:40970310-40970311(-) m6A CDS//exon       24981863//28052920//26404942//27371828
chr17:40970387-40970388(-) m6A CDS//exon       24981863//26404942//27371828
chr17:40970567-40970568(-) m6A CDS//exon//intron       24981863//26404942//27371828
chr17:40970603-40970604(-) m6A CDS//exon//intron       27371828
chr17:40970612-40970613(-) m6A CDS//exon//intron       27371828
chr17:40970661-40970662(-) m6A CDS//exon//intron       27371828
chr17:40970687-40970688(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536
chr17:40970810-40970811(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536
chr17:40970823-40970824(-) m6A 3'UTR//CDS//exon//intron       27371828//27773536
chr17:40971611-40971612(-) m6A 3'UTR//CDS//exon       -
chr17:40972390-40972391(-) m6A exon//intron       -
chr17:40972805-40972806(-) m6A CDS//exon       27773535
chr17:40972820-40972821(-) m6A CDS//exon       27773535
chr17:40972830-40972831(-) m6A CDS//exon       27773535
chr17:40975755-40975756(-) m6A CDS//intron       27773535
chr17:40975772-40975773(-) m6A CDS//exon       27773535
chr17:40975791-40975792(-) m6A CDS//exon       27773535//27773536
chr17:40975812-40975813(-) m6A CDS//exon       27773535//27773536
chr17:40975817-40975818(-) m6A CDS//exon       27773535//27773536
chr17:40976200-40976201(-) m6A 5'UTR//exon//intron       24284625//24981863//27371828//27773536
chr17:40976205-40976206(-) m6A 5'UTR//exon//intron       24284625//24981863//27371828//27773536
chr17:40976273-40976274(-) m6A 5'UTR//exon//intron       24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-30a-3p
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Breast milk|Endothelial cells|Epithelial cells|Tongue tissue     -
Microvesicle Seminal plasma     23539611
Microvesicle Follicular fluid     23666971
Microvesicle Serum     24797360
Microvesicle Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
BECN1
Chromatin K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-30a-3p
Sorafenib 216239 Drug interaction    RC00000903
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-30a-3p
Imatinib 5291       25349971

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-30a-3p
Interactor2: BECN1

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence DIANA
Support Database ViRBase

References:


PMID 31985023 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line None Interactor2 expression None
Description In the predication analysis, NEAT1 targeted 144 mRNAs through miRNAs (Table III).

Starting a new search, please wait ...