Detail Information

Basic Information:


  VIRBase ID:  

HHID00085364

  Virus:  

Suid betaherpesvirus 2

  Host:  

Sus scrofa

  Confidence Score:  

0.5908

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol ssc-miR-196b-5p AGTR1
miRBase
Accession/Entrez ID		 MIMAT0013923 100519976
Organism Sus scrofa Sus scrofa
Category miRNA mRNA
Alias - AT1

Interaction Network (The top 100 interactions):


Interactor1: ssc-miR-196b-5p
Interactor2: AGTR1

Evidence Support:


Weak-Evidence MiRNA sequencing
Prediction-Evidence miRanda//Targetscan
Support Database ViRBase

References:


PMID 26943793 Target region 3'UTR
Source ViRBase Interactor1 expression Upregulation
Tissue or cell line porcine macrophages Interactor2 expression None
Description The database microT-CDS (http://diana.imis.athena-innovation.gr/DianaTools/index.php r=microT_CDS/index), the positional relationships between miRNAs, and genomic annotation sets were used for the prediction of targets of the 130 DE miRNAs.To explore the regulatory roles of the DE miRNAs from this study, web prediction programs were used to predict their putative target genes (S3 Table).

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