Detail Information

Basic Information:


  VIRBase ID:  

HHID00083101

  Virus:  

Suid betaherpesvirus 2

  Host:  

Sus scrofa

  Confidence Score:  

0.5908

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol ssc-miR-18a CSNK2A2
miRBase
Accession/Entrez ID		 MIMAT0002161 100737256
Organism Sus scrofa Sus scrofa
Category miRNA mRNA
Alias - -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ssc-miR-18a
Exosome Porcine milk     24499489

Interaction Network (The top 100 interactions):


Interactor1: ssc-miR-18a
Interactor2: CSNK2A2

Evidence Support:


Weak-Evidence MiRNA sequencing
Prediction-Evidence miRanda//Targetscan
Support Database ViRBase

References:


PMID 26943793 Target region 3'UTR
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line porcine macrophages Interactor2 expression None
Description The database microT-CDS (http://diana.imis.athena-innovation.gr/DianaTools/index.php r=microT_CDS/index), the positional relationships between miRNAs, and genomic annotation sets were used for the prediction of targets of the 130 DE miRNAs.To explore the regulatory roles of the DE miRNAs from this study, web prediction programs were used to predict their putative target genes (S3 Table).

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