Detail

Basic Information:

VIRBase ID:

HHID00082477

Virus:

Suid betaherpesvirus 2

Host:

Sus scrofa

Confidence Score:

0.5908

Interaction Type:

Host-Host interaction

Predicted Binding:

*It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ssc-miR-18a	BCLAF1
miRBase Accession/Entrez ID	MIMAT0002161	100462726
Organism	Sus scrofa	Sus scrofa
Category	miRNA	mRNA
Alias	-	-

RNA Modification:

Resource

Symbol

ModificationPosition

Type

Genomic Context

PMID

RMBase

BCLAF1

chr1:31493396-31493397(-)	m6A	3'UTR	28267806
chr1:31493401-31493402(-)	m6A	3'UTR	28267806
chr1:31493860-31493861(-)	m6A	CDS	28267806
chr1:31493888-31493889(-)	m6A	CDS	28267806
chr1:31493936-31493937(-)	m6A	CDS	28267806
chr1:31509861-31509862(-)	m6A	CDS	28267806
chr1:31509871-31509872(-)	m6A	CDS	28267806
chr1:31510024-31510025(-)	m6A	CDS	28267806
chr1:31510038-31510039(-)	m6A	CDS	28267806
chr1:31510078-31510079(-)	m6A	CDS	28267806

RNA Localization:

Resource

Symbol

Subcellular Localization

Tissue or Cell Line

PMID

RNALocate

ssc-miR-18a

Exosome

Porcine milk

24499489

Interaction Network (The top 100 interactions):

Interactor1: ssc-miR-18a

Interactor2: BCLAF1

Evidence Support:

Weak-Evidence	MiRNA sequencing
Prediction-Evidence	miRanda//Targetscan
Support Database	ViRBase

References:

PMID	26943793	Target region	3'UTR
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	porcine macrophages	Interactor2 expression	None
Description	The database microT-CDS (http://diana.imis.athena-innovation.gr/DianaTools/index.php r=microT_CDS/index), the positional relationships between miRNAs, and genomic annotation sets were used for the prediction of targets of the 130 DE miRNAs.To explore the regulatory roles of the DE miRNAs from this study, web prediction programs were used to predict their putative target genes (S3 Table).