Basic Information:

  VIRBase ID:  

HHID00078895

  Virus:  

Suid betaherpesvirus 2

  Host:  

Sus scrofa

  Confidence Score:  

0.5908

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      ssc-miR-7-5p:  MIMAT0002141          IL1B:  NM_214055     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	ssc-miR-7-5p	IL1B
miRBase Accession/Entrez ID	MIMAT0002141	397122
Organism	Sus scrofa	Sus scrofa
Category	miRNA	mRNA
Alias	-	IL1B1

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ssc-miR-7-5p	Exosome Porcine milk     24499489

Interaction Network (The top 100 interactions):

Interactor1: ssc-miR-7-5p
Interactor2: IL1B

Evidence Support:

Weak-Evidence	MiRNA sequencing
Prediction-Evidence	miRanda//Targetscan
Support Database	ViRBase

References:

PMID	26943793	Target region	3'UTR
Source	ViRBase	Interactor1 expression	Upregulation
Tissue or cell line	Porcine macrophages	Interactor2 expression	None
Description	The database microT-CDS (http://diana.imis.athena-innovation.gr/DianaTools/index.php r=microT_CDS/index), the positional relationships between miRNAs, and genomic annotation sets were used for the prediction of targets of the 130 DE miRNAs.To explore the regulatory roles of the DE miRNAs from this study, web prediction programs were used to predict their putative target genes (S3 Table).