Basic Information:

  VIRBase ID:  

HHID00076464

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-199a-3p:  MIMAT0000230          Cobll1:  NM_001363077     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-199a-3p	Cobll1
miRBase Accession/Entrez ID	MIMAT0000230	319876
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	1810047P18Rik//Cob//Coblr1//D430044D16Rik

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Cobll1	chr2:65097821-65097822(-) m6A CDS       25683224//24981863//25569111 chr2:65097838-65097839(-) m6A CDS       25683224//24981863//25569111//22608085 chr2:65097847-65097848(-) m6A CDS       25683224//24981863//25569111//22608085 chr2:65097855-65097856(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65097865-65097866(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65097919-65097920(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65097941-65097942(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65097967-65097968(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65097989-65097990(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65098015-65098016(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65098037-65098038(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65098063-65098064(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65098085-65098086(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65098111-65098112(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65098177-65098178(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65098205-65098206(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr2:65098224-65098225(-) m6A CDS       25683224//24981863//25569111//22608085//22575960 chr2:65098355-65098356(-) m6A CDS       25683224//24981863//25569111//22608085 chr2:65098407-65098408(-) m6A CDS       25683224//24981863//25569111//22608085 chr2:65098449-65098450(-) m6A CDS       25683224//24981863//25569111//22608085//22575960 chr2:65098479-65098480(-) m6A CDS       25683224//25412662//24981863//25569111//22608085//22575960 chr2:65098510-65098511(-) m6A CDS       25683224//25412662//24981863//25569111//22608085//22575960 chr2:65098531-65098532(-) m6A CDS       25683224//25412662//24981863//25569111//22608085//22575960 chr2:65098550-65098551(-) m6A CDS       25683224//25412662//24981863//25569111//22608085//22575960 chr2:65098603-65098604(-) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr2:65098615-65098616(-) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr2:65098701-65098702(-) m6A CDS       25683224//24981863//25569111//22608085 chr2:65098793-65098794(-) m6A CDS       25683224//24981863//25569111//22608085 chr2:65098812-65098813(-) m6A CDS       25683224//24981863//25569111//22608085 chr2:65098833-65098834(-) m6A CDS       25683224//24981863//25569111//22608085 chr2:65098896-65098897(-) m6A CDS       25683224//24981863//25569111//22608085 chr2:65098931-65098932(-) m6A CDS       25683224//24981863//25569111//22608085 chr2:65099041-65099042(-) m6A CDS       25683224//24981863//25569111//22608085 chr2:65099050-65099051(-) m6A CDS       25683224//24981863//25412662//25569111//22608085 chr2:65099186-65099187(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085 chr2:65099232-65099233(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085 chr2:65099269-65099270(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085 chr2:65099320-65099321(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085 chr2:65099340-65099341(-) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085 chr2:65102079-65102080(-) m6A CDS//exon       25683224//24981863//25412662//25569111 chr2:65102092-65102093(-) m6A CDS//exon       25683224//24981863 chr2:65102100-65102101(-) m6A CDS//exon       25683224//24981863 chr2:65102124-65102125(-) m6A CDS//exon       25683224//24981863 chr2:65103187-65103188(-) m6A CDS//exon       25683224//24981863 chr2:65103211-65103212(-) m6A CDS//exon       25683224//24981863 chr2:65107774-65107775(-) m6A CDS       25683224//25412662 chr2:65107787-65107788(-) m6A CDS       25683224//25412662 chr2:65107802-65107803(-) m6A CDS       25683224//25412662 chr2:65107853-65107854(-) m6A CDS       25683224//25412662 chr2:65107889-65107890(-) m6A CDS       25683224//25412662 chr2:65126042-65126043(-) m6A CDS       25683224//24981863 chr2:65126256-65126257(-) m6A CDS       25683224//24981863 chr2:65126277-65126278(-) m6A CDS       25683224//24981863 chr2:65151095-65151096(-) m6A CDS//exon       25683224//25569111 chr2:65151159-65151160(-) m6A CDS//exon       25683224//25569111 chr2:65193031-65193032(-) m6A exon//intron       25412662 chr2:65235981-65235982(-) m6A exon//intron       25412662 chr2:65238434-65238435(-) m6A CDS//exon//intron       25412662//25569111 chr2:65238605-65238606(-) m6A 5'UTR//intron       25412662//25569111 chr2:65238640-65238641(-) m6A 5'UTR//intron       25412662 chr2:65238669-65238670(-) m6A 5'UTR//intron       25412662

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-199a-3p	Exosome Conditioned medium of E13 SMG     28041903 Exosome B6 BMDCs     22031862
	Cobll1	Exosome Mast cells     17486113 Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-199a-3p
Interactor2: Cobll1

Evidence Support:

Weak-Evidence	MiRNA microarray
Prediction-Evidence	Targetscan
Support Database	ViRBase

References:

PMID	20643939	Target region	None
Source	ViRBase	Interactor1 expression	Upregulation
Tissue or cell line	NIH3T3 cells	Interactor2 expression	Downregulation
Description	All of the regulated genes in Fig. 5B are down-regulated by miR-199a-3p mimic and up-regulated by miR-199a-3p inhibitor compared with the negative transfection control, with the exception of ITGA6, which is only up-regulated by the inhibitor (Dataset S3).