Basic Information:

  VIRBase ID:  

HHID00076414

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-199a-3p:  MIMAT0000230          Uaca:  NM_001357408     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-199a-3p	Uaca
miRBase Accession/Entrez ID	MIMAT0000230	72565
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	2700059D02Rik//nuc//nucling

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Uaca	chr9:60794583-60794584(+) m6A 5'UTR       25683224//25412662//25569111 chr9:60794589-60794590(+) m6A 5'UTR       25683224//25412662//25569111 chr9:60850138-60850139(+) m6A CDS       25683224 chr9:60850309-60850310(+) m6A CDS       25683224 chr9:60850367-60850368(+) m6A CDS       25683224 chr9:60850394-60850395(+) m6A CDS       25683224 chr9:60850403-60850404(+) m6A CDS       25683224 chr9:60854452-60854453(+) m6A CDS       25683224//25412662 chr9:60854461-60854462(+) m6A CDS       25683224//25412662 chr9:60854485-60854486(+) m6A CDS       25683224//25412662 chr9:60856204-60856205(+) m6A CDS       25683224//25412662 chr9:60856219-60856220(+) m6A CDS       25683224//25412662//24981863 chr9:60859192-60859193(+) m6A CDS       25683224//25412662//24981863 chr9:60859201-60859202(+) m6A CDS       25683224//25412662//24981863 chr9:60861107-60861108(+) m6A CDS       24981863 chr9:60863659-60863660(+) m6A CDS       24981863 chr9:60863678-60863679(+) m6A CDS       24981863 chr9:60866378-60866379(+) m6A CDS       24981863 chr9:60867440-60867441(+) m6A CDS       25569111 chr9:60867453-60867454(+) m6A CDS       25569111 chr9:60869652-60869653(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60869694-60869695(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60869703-60869704(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60869723-60869724(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60869728-60869729(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60869750-60869751(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60869812-60869813(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60869822-60869823(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60869894-60869895(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60869904-60869905(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60869975-60869976(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60869995-60869996(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60870056-60870057(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60870185-60870186(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60870319-60870320(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60870361-60870362(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60870407-60870408(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60870478-60870479(+) m6A CDS       25683224//25412662//24981863//25569111 chr9:60870506-60870507(+) m6A CDS       25683224//24981863//25412662//25569111 chr9:60870524-60870525(+) m6A CDS       25683224//24981863//25569111 chr9:60870695-60870696(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:60870767-60870768(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:60870809-60870810(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr9:60870886-60870887(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:60870903-60870904(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr9:60870933-60870934(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60870961-60870962(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60870978-60870979(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60871040-60871041(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr9:60871072-60871073(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr9:60871267-60871268(+) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr9:60871355-60871356(+) m6A CDS       25683224//25412662//24981863//25569111 chr9:60871450-60871451(+) m6A CDS       25683224//25412662//24981863//25569111 chr9:60871564-60871565(+) m6A CDS       25683224//25412662//24981863 chr9:60871825-60871826(+) m6A CDS       25683224//25412662//24981863//25569111 chr9:60871935-60871936(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60871952-60871953(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60871971-60871972(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60871993-60871994(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60872001-60872002(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60872055-60872056(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60872081-60872082(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60872095-60872096(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60872185-60872186(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr9:60872228-60872229(+) m6A CDS       25683224//25412662//24981863//25569111 chr9:60872275-60872276(+) m6A CDS       25683224//25412662//24981863//25569111 chr9:60874040-60874041(+) m6A CDS       25683224//25412662//24981863//25569111 chr9:60874061-60874062(+) m6A CDS       25683224//25412662//25569111 chr9:60876372-60876373(+) m6A CDS       25683224//25412662 chr9:60876403-60876404(+) m6A CDS       25683224//25412662 chr9:60880341-60880342(+) m6A 3'UTR       25683224

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-199a-3p	Exosome Conditioned medium of E13 SMG     28041903 Exosome B6 BMDCs     22031862

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-199a-3p
Interactor2: Uaca

Evidence Support:

Weak-Evidence	MiRNA microarray
Prediction-Evidence	Targetscan
Support Database	ViRBase

References:

PMID	20643939	Target region	None
Source	ViRBase	Interactor1 expression	Upregulation
Tissue or cell line	NIH3T3 cells	Interactor2 expression	Downregulation
Description	All of the regulated genes in Fig. 5B are down-regulated by miR-199a-3p mimic and up-regulated by miR-199a-3p inhibitor compared with the negative transfection control, with the exception of ITGA6, which is only up-regulated by the inhibitor (Dataset S3).