Basic Information:

  VIRBase ID:  

HHID00076324

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-199a-3p:  MIMAT0000230          Thbs1:  NM_011580     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-199a-3p	Thbs1
miRBase Accession/Entrez ID	MIMAT0000230	21825
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	tbs//tbsp1//Thbs-//Thbs-1//TS//TSP//TSP-1//TSP1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Thbs1	chr2:118111924-118111925(+) m6A 5'UTR       25412662//24981863//25569111 chr2:118112007-118112008(+) m6A 5'UTR       25683224//25412662//24981863//25569111 chr2:118112659-118112660(+) m6A CDS       25683224//25412662//25569111 chr2:118113006-118113007(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:118113131-118113132(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:118113199-118113200(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:118113233-118113234(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:118113287-118113288(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr2:118113389-118113390(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr2:118113410-118113411(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr2:118114366-118114367(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:118114379-118114380(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:118114391-118114392(+) m6A CDS       25683224//25412662//24981863//25569111 chr2:118114736-118114737(+) m6A CDS       24981863//25569111 chr2:118114743-118114744(+) m6A CDS       24981863//25569111 chr2:118114777-118114778(+) m6A CDS       25683224//24981863//25412662//25569111 chr2:118114798-118114799(+) m6A CDS       25683224//24981863//25412662//25569111 chr2:118114836-118114837(+) m6A CDS       25683224//24981863//25412662//25569111 chr2:118114957-118114958(+) m6A CDS       25683224//24981863//25412662//25569111 chr2:118115023-118115024(+) m6A CDS       25683224//25412662//25569111 chr2:118115037-118115038(+) m6A CDS       25683224//25412662//25569111 chr2:118115044-118115045(+) m6A CDS       25683224//25412662//25569111 chr2:118117620-118117621(+) m6A CDS       25683224 chr2:118117626-118117627(+) m6A CDS       25683224 chr2:118118165-118118166(+) m6A CDS       25683224 chr2:118118307-118118308(+) m6A CDS       25683224 chr2:118118681-118118682(+) m6A CDS       25683224 chr2:118118765-118118766(+) m6A CDS       25683224 chr2:118118810-118118811(+) m6A CDS       25683224 chr2:118119362-118119363(+) m6A CDS       25683224//25412662 chr2:118119376-118119377(+) m6A CDS       25683224//25412662 chr2:118119452-118119453(+) m6A CDS       25683224//25412662 chr2:118119470-118119471(+) m6A CDS       25683224 chr2:118119824-118119825(+) m6A CDS       25683224 chr2:118119832-118119833(+) m6A CDS       25683224 chr2:118119964-118119965(+) m6A CDS       25683224//25412662 chr2:118119970-118119971(+) m6A CDS       25683224//25412662 chr2:118119994-118119995(+) m6A CDS       25683224//25412662 chr2:118120258-118120259(+) m6A CDS       25683224//25412662 chr2:118120896-118120897(+) m6A CDS       25683224//25412662//24981863 chr2:118120941-118120942(+) m6A CDS       25683224//25412662//24981863 chr2:118120947-118120948(+) m6A CDS       25683224//25412662//24981863 chr2:118120980-118120981(+) m6A CDS       25683224//25412662//24981863 chr2:118121134-118121135(+) m6A CDS       25683224//25412662//24981863 chr2:118121161-118121162(+) m6A CDS       25683224//25412662//24981863 chr2:118121170-118121171(+) m6A CDS       25683224//25412662 chr2:118121176-118121177(+) m6A CDS       25683224//25412662 chr2:118121219-118121220(+) m6A CDS       25683224//25412662 chr2:118121230-118121231(+) m6A CDS       25683224//25412662 chr2:118122449-118122450(+) m6A CDS       25683224//25412662 chr2:118122461-118122462(+) m6A CDS       25683224//25412662 chr2:118122473-118122474(+) m6A CDS       25683224//25412662 chr2:118122494-118122495(+) m6A CDS       25683224//25412662 chr2:118122518-118122519(+) m6A CDS       25683224//25412662 chr2:118122527-118122528(+) m6A CDS       25683224//25569111 chr2:118122635-118122636(+) m6A CDS       25683224//25569111 chr2:118122671-118122672(+) m6A CDS       25683224//25569111 chr2:118122968-118122969(+) m6A CDS//exon       25569111 chr2:118123013-118123014(+) m6A CDS//exon       25569111 chr2:118123060-118123061(+) m6A CDS//exon       25569111 chr2:118123070-118123071(+) m6A CDS//exon       25569111 chr2:118123077-118123078(+) m6A CDS//exon       25569111 chr2:118123090-118123091(+) m6A CDS//exon       25569111 chr2:118123471-118123472(+) m6A CDS//exon       25683224 chr2:118123525-118123526(+) m6A CDS//exon       25683224 chr2:118123593-118123594(+) m6A exon//intron       25683224 chr2:118123999-118124000(+) m6A CDS       25683224 chr2:118124161-118124162(+) m6A CDS       25683224//25569111 chr2:118124177-118124178(+) m6A CDS       25683224//25569111 chr2:118124194-118124195(+) m6A CDS       25683224//25569111 chr2:118124238-118124239(+) m6A CDS       25683224//24981863//25569111 chr2:118125076-118125077(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr2:118125091-118125092(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr2:118125155-118125156(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr2:118125171-118125172(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr2:118125199-118125200(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr2:118125248-118125249(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr2:118125351-118125352(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr2:118125432-118125433(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr2:118125444-118125445(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr2:118125570-118125571(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:118125578-118125579(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:118125679-118125680(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr2:118125772-118125773(+) m6A 3'UTR       25683224//25412662//24981863//25569111 chr2:118125815-118125816(+) m6A 3'UTR       25683224//24981863//25569111 chr2:118125826-118125827(+) m6A 3'UTR       25683224//24981863//25569111 chr2:118125926-118125927(+) m6A 3'UTR       24981863//25569111 chr2:118126094-118126095(+) m6A 3'UTR       24981863//25569111 chr2:118126108-118126109(+) m6A 3'UTR       24981863//25569111 chr2:118126196-118126197(+) m6A 3'UTR       25683224//25412662//24981863//25569111 chr2:118126256-118126257(+) m6A 3'UTR       25683224//25412662//24981863//25569111 chr2:118126321-118126322(+) m6A 3'UTR       25683224//25412662//24981863//25569111 chr2:118126469-118126470(+) m6A 3'UTR       24981863//25569111 chr2:118126511-118126512(+) m6A 3'UTR       24981863//25569111 chr2:118126522-118126523(+) m6A 3'UTR       24981863//25569111 chr2:118126605-118126606(+) m6A 3'UTR       24981863//25569111 chr2:118126612-118126613(+) m6A 3'UTR       24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-199a-3p	Exosome Conditioned medium of E13 SMG     28041903 Exosome B6 BMDCs     22031862

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-199a-3p
Interactor2: Thbs1

Evidence Support:

Weak-Evidence	MiRNA microarray
Prediction-Evidence	Targetscan
Support Database	ViRBase

References:

PMID	20643939	Target region	None
Source	ViRBase	Interactor1 expression	Upregulation
Tissue or cell line	NIH3T3 cells	Interactor2 expression	Downregulation
Description	All of the regulated genes in Fig. 5B are down-regulated by miR-199a-3p mimic and up-regulated by miR-199a-3p inhibitor compared with the negative transfection control, with the exception of ITGA6, which is only up-regulated by the inhibitor (Dataset S3).