Basic Information:

  VIRBase ID:  

HHID00076244

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-199a-3p:  MIMAT0000230          Elk3:  NM_001322265     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-199a-3p	Elk3
miRBase Accession/Entrez ID	MIMAT0000230	13713
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	D430049E23Rik//E//Erp//Etrp//Ne//Net//Sa//Sap-2

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Elk3	chr10:93247539-93247540(-) m6A 3'UTR       25683224//25569111 chr10:93247558-93247559(-) m6A 3'UTR       25683224//25569111 chr10:93247715-93247716(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr10:93247735-93247736(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr10:93247821-93247822(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr10:93247868-93247869(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr10:93247877-93247878(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr10:93248039-93248040(-) m6A 3'UTR       25683224//24981863//25569111 chr10:93248052-93248053(-) m6A 3'UTR       25683224//24981863//25569111 chr10:93248114-93248115(-) m6A 3'UTR       25683224//24981863//25569111 chr10:93248217-93248218(-) m6A 3'UTR       25683224//24981863//25569111 chr10:93248241-93248242(-) m6A 3'UTR       24981863//25569111 chr10:93248303-93248304(-) m6A 3'UTR       24981863//25569111 chr10:93248340-93248341(-) m6A 3'UTR       24981863//25569111 chr10:93248371-93248372(-) m6A 3'UTR       24981863//25569111 chr10:93248410-93248411(-) m6A 3'UTR       24981863 chr10:93248433-93248434(-) m6A 3'UTR       24981863 chr10:93248441-93248442(-) m6A 3'UTR       24981863 chr10:93248449-93248450(-) m6A 3'UTR       24981863 chr10:93248473-93248474(-) m6A 3'UTR       24981863 chr10:93248565-93248566(-) m6A 3'UTR       24981863 chr10:93248683-93248684(-) m6A 3'UTR       25683224//24981863//25569111 chr10:93248699-93248700(-) m6A 3'UTR       25683224//24981863//25569111 chr10:93248774-93248775(-) m6A 3'UTR       25683224//24981863//25569111 chr10:93249154-93249155(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr10:93249182-93249183(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr10:93249194-93249195(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr10:93249281-93249282(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr10:93249291-93249292(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr10:93249324-93249325(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr10:93249338-93249339(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr10:93249345-93249346(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr10:93249408-93249409(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr10:93249419-93249420(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr10:93249430-93249431(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr10:93249448-93249449(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr10:93249462-93249463(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr10:93249511-93249512(-) m6A 3'UTR       24981863//25569111 chr10:93249523-93249524(-) m6A 3'UTR       24981863//25569111 chr10:93249831-93249832(-) m6A 3'UTR       24981863 chr10:93249896-93249897(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr10:93249906-93249907(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr10:93249966-93249967(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr10:93249973-93249974(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr10:93250058-93250059(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111 chr10:93254701-93254702(-) m6A 3'UTR//CDS       25683224//25412662//24981863//25569111 chr10:93254799-93254800(-) m6A CDS       25683224//25412662//24981863//25569111 chr10:93265002-93265003(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr10:93265037-93265038(-) m6A CDS//intron       25683224//25412662//24981863//25456834//25569111 chr10:93265116-93265117(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr10:93265268-93265269(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr10:93265319-93265320(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111 chr10:93265346-93265347(-) m6A CDS//intron       25683224//25412662//24981863//25569111 chr10:93284433-93284434(-) m6A exon//intron       25683224//25569111 chr10:93284896-93284897(-) m6A CDS//exon       25683224//25569111 chr10:93284918-93284919(-) m6A CDS//exon       25683224//25569111 chr10:93284925-93284926(-) m6A CDS//exon       25683224//25569111 chr10:93310776-93310777(-) m6A 5'UTR//exon       25683224//24981863//25569111 chr10:93310851-93310852(-) m6A 5'UTR//exon       25683224//24981863//25569111 chr10:93311031-93311032(-) m6A 5'UTR//exon       25683224//25412662//24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-199a-3p	Exosome Conditioned medium of E13 SMG     28041903 Exosome B6 BMDCs     22031862

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-199a-3p
Interactor2: Elk3

Evidence Support:

Weak-Evidence	MiRNA microarray
Prediction-Evidence	Targetscan
Support Database	ViRBase

References:

PMID	20643939	Target region	None
Source	ViRBase	Interactor1 expression	Upregulation
Tissue or cell line	NIH3T3 cells	Interactor2 expression	Downregulation
Description	All of the regulated genes in Fig. 5B are down-regulated by miR-199a-3p mimic and up-regulated by miR-199a-3p inhibitor compared with the negative transfection control, with the exception of ITGA6, which is only up-regulated by the inhibitor (Dataset S3).