Detail Information

Basic Information:


  VIRBase ID:  

HHID00076097

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:           CHAC2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-101-2-5p CHAC2
miRBase
Accession/Entrez ID		 MIMAT0037312 494143
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - GCG1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-101-2-5p
rs1189997653 chr9:4850323    C/G
rs1411860402 chr9:4850328    G/C
rs1472339708 chr9:4850325    G/A
rs374692878 chr9:4850308    T/C
rs752365347 chr9:4850320    G/C
rs758036961 chr9:4850324    C/T
rs777507775 chr9:4850326    A/G
rs570832031 chr9:4850310    G/A
rs570832031 chr9:4850310    G/T
rs766953168 chr9:4850309    C/T
rs779213487 chr9:4850315    T/C
rs894878476 chr9:4850314    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CHAC2
chr2:54000910(+) A-I      intronic
chr2:54000707(+) A-I      intronic
chr2:54000733(+) A-I      intronic
chr2:54001116(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CHAC2
chr2:53995078-53995079(+) m6A CDS       24209618//24981863
chr2:53995135-53995136(+) m6A CDS       24209618
chr2:54001324-54001325(+) m1A CDS       26863196
chr2:54001371-54001372(+) m6A CDS       24284625//24209618//22608085
chr2:54001412-54001413(+) m6A CDS       24284625//24209618//24981863//22608085
chr2:54001440-54001441(+) m6A CDS       24284625//24209618//24981863//22608085
chr2:54001483-54001484(+) m6A CDS       24284625//24209618//24981863//22608085
chr2:54001493-54001494(+) m6A CDS       24284625//24209618//24981863//22608085
chr2:54001547-54001548(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr2:54001567-54001568(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr2:54001640-54001641(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr2:54001645-54001646(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr2:54001763-54001764(+) m6A 3'UTR       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CHAC2
Exosome Blood     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-101-2-5p
Interactor2: CHAC2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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