Detail Information

Basic Information:


  VIRBase ID:  

HHID00076095

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:           MTX3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-101-2-5p MTX3
miRBase
Accession/Entrez ID		 MIMAT0037312 345778
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-101-2-5p
rs1189997653 chr9:4850323    C/G
rs1411860402 chr9:4850328    G/C
rs1472339708 chr9:4850325    G/A
rs374692878 chr9:4850308    T/C
rs752365347 chr9:4850320    G/C
rs758036961 chr9:4850324    C/T
rs777507775 chr9:4850326    A/G
rs570832031 chr9:4850310    G/A
rs570832031 chr9:4850310    G/T
rs766953168 chr9:4850309    C/T
rs779213487 chr9:4850315    T/C
rs894878476 chr9:4850314    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR MTX3
chr5:79283767(-) A-I      intronic
chr5:79283777(-) A-I      intronic
chr5:79283833(-) A-I      intronic
chr5:79283859(-) A-I      intronic
chr5:79283882(-) A-I      intronic
chr5:79280979(-) A-I      intronic
chr5:79281076(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED MTX3
chr5:79281864(-) A-I intron -    15342557
chr5:79281890(-) A-I intron -    15342557
chr5:79283015(-) A-I intron -    15342557
chr5:79283047(-) A-I intron -    15342557
chr5:79283084(-) A-I intron -    15342557
chr5:79283098(-) A-I intron -    15342557
chr5:79283101(-) A-I intron -    15342557
chr5:79283151(-) A-I intron -    15342557
chr5:79283154(-) A-I intron -    15342557
chr5:79283047(-) A-G intron -    22484847
chr5:79283101(-) A-G intron -    22484847
chr5:79283919(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MTX3
chr5:79275944-79275945(-) Y 3'UTR       26075521
chr5:79276299-79276300(-) m6A 3'UTR       27773535
chr5:79276334-79276335(-) m6A 3'UTR       27773535
chr5:79276360-79276361(-) m6A 3'UTR       27773535
chr5:79279242-79279243(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr5:79279265-79279266(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr5:79279292-79279293(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr5:79279385-79279386(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr5:79279395-79279396(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr5:79279402-79279403(-) m6A 3'UTR//intron       24284625//24981863//27773535//22608085
chr5:79279572-79279573(-) m6A 3'UTR//CDS//intron       24284625//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MTX3
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-101-2-5p
Interactor2: MTX3

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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