Detail Information

Basic Information:


  VIRBase ID:  

HHID00076087

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:           ZNF746:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-101-2-5p ZNF746
miRBase
Accession/Entrez ID		 MIMAT0037312 155061
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - PARIS

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-101-2-5p
rs1189997653 chr9:4850323    C/G
rs1411860402 chr9:4850328    G/C
rs1472339708 chr9:4850325    G/A
rs374692878 chr9:4850308    T/C
rs752365347 chr9:4850320    G/C
rs758036961 chr9:4850324    C/T
rs777507775 chr9:4850326    A/G
rs570832031 chr9:4850310    G/A
rs570832031 chr9:4850310    G/T
rs766953168 chr9:4850309    C/T
rs779213487 chr9:4850315    T/C
rs894878476 chr9:4850314    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZNF746
chr7:149179724(-) A-I      intronic
chr7:149180660(-) A-I      intronic
chr7:149179725(-) A-I      intronic
chr7:149180568(-) A-I      intronic
chr7:149180616(-) A-I      intronic
chr7:149177591(-) A-I      intronic
chr7:149179729(-) A-I      intronic
chr7:149179823(-) A-I      intronic
chr7:149180554(-) A-I      intronic
chr7:149180558(-) A-I      intronic
chr7:149179812(-) A-I      intronic
chr7:149177524(-) A-I      intronic
chr7:149177562(-) A-I      intronic
chr7:149177040(-) A-I      intronic
chr7:149180535(-) A-I      intronic
chr7:149179694(-) A-I      intronic
chr7:149179667(-) A-I      intronic
chr7:149179752(-) A-I      intronic
chr7:149180532(-) A-I      intronic
chr7:149180447(-) A-I      intronic
chr7:149180611(-) A-I      intronic
chr7:149176977(-) A-I      intronic
chr7:149179822(-) A-I      intronic
chr7:149179738(-) A-I      intronic
chr7:149179684(-) A-I      intronic
chr7:149176969(-) A-I      intronic
chr7:149179735(-) A-I      intronic
chr7:149179733(-) A-I      intronic
chr7:149179688(-) A-I      intronic
chr7:149180615(-) A-I      intronic
chr7:149179616(-) A-I      intronic
chr7:149179720(-) A-I      intronic
chr7:149177102(-) A-I      intronic
chr7:149179734(-) A-I      intronic
chr7:149180438(-) A-I      intronic
chr7:149176891(-) A-I      intronic
chr7:149177715(-) A-I      intronic
chr7:149180518(-) A-I      intronic
chr7:149179653(-) A-I      intronic
chr7:149179837(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZNF746
chr7:149176891(-) A-G intron -    22484847
chr7:149176969(-) A-G intron -    22484847
chr7:149176977(-) A-G intron -    22484847
chr7:149177664(-) A-G intron -    22484847
chr7:149177715(-) A-G intron -    22484847
chr7:149177787(-) G-T intron -    22484847
chr7:149179720(-) A-G intron -    22484847
chr7:149179734(-) A-G intron -    22484847
chr7:149179837(-) A-G intron -    22484847
chr7:149180611(-) A-G intron -    22484847
chr7:149180615(-) A-G intron -    22484847
chr7:149183051(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF746
chr7:149169899-149169900(-) m6A 3'UTR       27773535
chr7:149169917-149169918(-) m6A 3'UTR       27773535
chr7:149170011-149170012(-) m6A 3'UTR       27773535
chr7:149170384-149170385(-) m6A 3'UTR       -
chr7:149170400-149170401(-) m6A 3'UTR       27773535
chr7:149170842-149170843(-) Y 3'UTR       26075521
chr7:149170924-149170925(-) m6A 3'UTR       24284625
chr7:149171235-149171236(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr7:149171295-149171296(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:149171312-149171313(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr7:149171325-149171326(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:149171350-149171351(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:149171371-149171372(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:149171481-149171482(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:149171498-149171499(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:149171521-149171522(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:149171538-149171539(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:149171555-149171556(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:149171629-149171630(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr7:149171673-149171674(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr7:149172085-149172086(-) m1A CDS       26863196
chr7:149172118-149172119(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr7:149172140-149172141(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr7:149172171-149172172(-) m6A CDS       24284625//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr7:149172192-149172193(-) m6A CDS       24284625//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr7:149172234-149172235(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:149172251-149172252(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr7:149172297-149172298(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr7:149172310-149172311(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr7:149172348-149172349(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr7:149172390-149172391(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr7:149172473-149172474(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr7:149172484-149172485(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr7:149172550-149172551(-) m6A CDS//exon       24284625//24981863//27773535
chr7:149174045-149174046(-) m6A CDS//exon       24284625//27773535//27773536
chr7:149174677-149174678(-) m6A CDS//exon       24284625//27773535//27773536
chr7:149174818-149174819(-) m6A CDS//exon       27773536
chr7:149174947-149174948(-) m6A exon//intron       27773536
chr7:149187665-149187666(-) m6A 3'UTR//intron       27773535
chr7:149187896-149187897(-) m6A 3'UTR//intron       27773535
chr7:149188580-149188581(-) m6A 3'UTR//intron       -
chr7:149188598-149188599(-) m6A 3'UTR//intron       -
chr7:149188608-149188609(-) m6A 3'UTR//intron       -
chr7:149188618-149188619(-) m6A 3'UTR//intron       -
chr7:149188673-149188674(-) m6A 3'UTR//intron       -
chr7:149191141-149191142(-) m6A CDS       24284625
chr7:149191343-149191344(-) m6A CDS       -
chr7:149191361-149191362(-) m6A CDS       -
chr7:149191464-149191465(-) m6A CDS       24284625
chr7:149191485-149191486(-) m1A CDS       26863196
chr7:149191503-149191504(-) m6A CDS       24284625
chr7:149194639-149194640(-) m6A 5'UTR       24284625//27773536
chr7:149194819-149194820(-) m6A 5'UTR       24981863//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ZNF746
Chromatin K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-101-2-5p
Interactor2: ZNF746

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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