Detail Information

Basic Information:


  VIRBase ID:  

HHID00076086

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:           TMEM167A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-101-2-5p TMEM167A
miRBase
Accession/Entrez ID		 MIMAT0037312 153339
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - TMEM167

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-101-2-5p
rs1189997653 chr9:4850323    C/G
rs1411860402 chr9:4850328    G/C
rs1472339708 chr9:4850325    G/A
rs374692878 chr9:4850308    T/C
rs752365347 chr9:4850320    G/C
rs758036961 chr9:4850324    C/T
rs777507775 chr9:4850326    A/G
rs570832031 chr9:4850310    G/A
rs570832031 chr9:4850310    G/T
rs766953168 chr9:4850309    C/T
rs779213487 chr9:4850315    T/C
rs894878476 chr9:4850314    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMEM167A
chr5:82370728(-) A-I      intronic
chr5:82370767(-) A-I      intronic
chr5:82357352(-) A-I      intronic
chr5:82357366(-) A-I      intronic
chr5:82368486(-) A-I      intronic
chr5:82371512(-) A-I      intronic
chr5:82368423(-) A-I      intronic
chr5:82368539(-) A-I      intronic
chr5:82370727(-) A-I      intronic
chr5:82371371(-) A-I      intronic
chr5:82371481(-) A-I      intronic
chr5:82371398(-) A-I      intronic
chr5:82371391(-) A-I      intronic
chr5:82357418(-) A-I      intronic
chr5:82370796(-) A-I      intronic
chr5:82368530(-) A-I      intronic
chr5:82357487(-) A-I      intronic
chr5:82357415(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TMEM167A
chr5:82357418(-) A-G intron -    22484847
chr5:82370861(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMEM167A
chr5:82349080-82349081(-) m6A 3'UTR       24284625//25456834//22608085
chr5:82349209-82349210(-) m6A 3'UTR       22608085
chr5:82352749-82352750(-) m6A 3'UTR//exon       24981863//22608085
chr5:82352801-82352802(-) m6A 3'UTR//exon       24284625//24981863//22575960//22608085
chr5:82352850-82352851(-) m6A 3'UTR//exon       24284625//24981863//22575960//22608085
chr5:82352856-82352857(-) m6A 3'UTR//exon       24284625//24981863//22575960//22608085
chr5:82360830-82360831(-) m6A CDS//exon//intron       24284625
chr5:82360841-82360842(-) m6A CDS//exon//intron       24284625
chr5:82367200-82367201(-) m6A exon//intron       24284625//24981863
chr5:82373205-82373206(-) m6A 5'UTR//exon//intron       25456834//24981863
chr5:82373649-82373650(-) m6A exon       25456834
chr5:82373665-82373666(-) m6A exon       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TMEM167A
Chromatin K562 cells     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-101-2-5p
Interactor2: TMEM167A

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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