Detail Information

Basic Information:


  VIRBase ID:  

HHID00076085

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:           C1orf52:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-101-2-5p C1orf52
miRBase
Accession/Entrez ID		 MIMAT0037312 148423
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - gm117

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-101-2-5p
rs1189997653 chr9:4850323    C/G
rs1411860402 chr9:4850328    G/C
rs1472339708 chr9:4850325    G/A
rs374692878 chr9:4850308    T/C
rs752365347 chr9:4850320    G/C
rs758036961 chr9:4850324    C/T
rs777507775 chr9:4850326    A/G
rs570832031 chr9:4850310    G/A
rs570832031 chr9:4850310    G/T
rs766953168 chr9:4850309    C/T
rs779213487 chr9:4850315    T/C
rs894878476 chr9:4850314    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C1orf52
chr1:85720376(-) A-I      intronic
chr1:85720180(-) A-I      intronic
chr1:85720253(-) A-I      intronic
chr1:85720303(-) A-I      intronic
chr1:85720097(-) A-I      intronic
chr1:85720104(-) A-I      intronic
chr1:85720108(-) A-I      intronic
chr1:85720132(-) A-I      intronic
chr1:85722395(-) A-I      intronic
chr1:85722269(-) A-I      intronic
chr1:85722464(-) A-I      intronic
chr1:85722374(-) A-I      intronic
chr1:85720151(-) A-I      intronic
chr1:85720196(-) A-I      intronic
chr1:85720207(-) A-I      intronic
chr1:85720213(-) A-I      intronic
chr1:85722313(-) A-I      intronic
chr1:85720150(-) A-I      intronic
chr1:85720245(-) A-I      intronic
chr1:85721085(-) A-I      intronic
chr1:85722382(-) A-I      intronic
chr1:85720242(-) A-I      intronic
chr1:85720246(-) A-I      intronic
chr1:85721146(-) A-I      intronic
chr1:85720270(-) A-I      intronic
chr1:85722370(-) A-I      intronic
chr1:85721000(-) A-I      intronic
chr1:85720279(-) A-I      intronic
chr1:85720346(-) A-I      intronic
chr1:85722324(-) A-I      intronic
chr1:85720308(-) A-I      intronic
chr1:85722358(-) A-I      intronic
chr1:85722315(-) A-I      intronic
chr1:85722217(-) A-I      intronic
chr1:85722238(-) A-I      intronic
chr1:85721084(-) A-I      intronic
chr1:85722334(-) A-I      intronic
chr1:85720110(-) A-I      intronic
chr1:85721076(-) A-I      intronic
chr1:85720280(-) A-I      intronic
chr1:85720186(-) A-I      intronic
chr1:85721133(-) A-I      intronic
chr1:85720251(-) A-I      intronic
chr1:85720355(-) A-I      intronic
chr1:85720254(-) A-I      intronic
chr1:85722400(-) A-I      intronic
chr1:85720171(-) A-I      intronic
chr1:85720252(-) A-I      intronic
chr1:85719752(-) A-I      intronic
chr1:85720105(-) A-I      intronic
chr1:85720249(-) A-I      intronic
chr1:85721111(-) A-I      intronic
chr1:85722419(-) A-I      intronic
chr1:85722226(-) A-I      intronic
chr1:85721807(-) A-I      intronic
chr1:85720153(-) A-I      intronic
chr1:85722239(-) A-I      intronic
chr1:85720243(-) A-I      intronic
chr1:85720347(-) A-I      intronic
chr1:85720255(-) A-I      intronic
chr1:85722333(-) A-I      intronic
chr1:85720113(-) A-I      intronic
chr1:85720311(-) A-I      intronic
chr1:85720330(-) A-I      intronic
chr1:85720269(-) A-I      intronic
chr1:85717324(-) A-I      3'UTR
chr1:85720244(-) A-I      intronic
chr1:85720239(-) A-I      intronic
chr1:85722373(-) A-I      intronic
chr1:85720190(-) A-I      intronic
chr1:85721150(-) A-I      intronic
chr1:85722456(-) A-I      intronic
chr1:85720172(-) A-I      intronic
chr1:85720978(-) A-I      intronic
chr1:85722293(-) A-I      intronic
chr1:85722318(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED C1orf52
chr1:85720150(-) A-I intron -    22327324
chr1:85720153(-) A-I intron -    22327324
chr1:85721807(-) A-I intron -    22327324
chr1:85720105(-) A-G intron -    22484847
chr1:85720110(-) A-G intron -    22484847
chr1:85720150(-) A-G intron -    22484847
chr1:85720153(-) A-G intron -    22484847
chr1:85720172(-) A-G intron -    22484847
chr1:85720186(-) A-G intron -    22484847
chr1:85720239(-) A-G intron -    22484847
chr1:85720242(-) A-G intron -    22484847
chr1:85720244(-) A-G intron -    22484847
chr1:85720246(-) A-G intron -    22484847
chr1:85720254(-) A-G intron -    22484847
chr1:85720255(-) A-G intron -    22484847
chr1:85720308(-) A-G intron -    22484847
chr1:85720311(-) A-G intron -    22484847
chr1:85720330(-) A-G intron -    22484847
chr1:85720346(-) A-G intron -    22484847
chr1:85720347(-) A-G intron -    22484847
chr1:85721000(-) A-G intron -    22484847
chr1:85722238(-) A-G intron -    22484847
chr1:85722315(-) A-G intron -    22484847
chr1:85722333(-) A-G intron -    22484847
chr1:85722382(-) A-G intron -    22484847
chr1:85722400(-) A-G intron -    22484847
chr1:85723831(-) C-T intron -    22484847
chr1:85721807(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C1orf52
chr1:85717722-85717723(-) m6A 3'UTR//exon       27773535
chr1:85717950-85717951(-) m6A 3'UTR//exon       27773535
chr1:85718003-85718004(-) m6A 3'UTR//exon       27773535
chr1:85718122-85718123(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085
chr1:85718139-85718140(-) m6A 3'UTR//exon       24981863//26404942//27773535//22608085
chr1:85718172-85718173(-) m6A 3'UTR//exon       24209618//24981863//26404942//27773535//22608085
chr1:85718194-85718195(-) m6A 3'UTR//exon       24209618//24981863//26404942//27773535//22608085
chr1:85718257-85718258(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//22608085
chr1:85718279-85718280(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22608085
chr1:85718308-85718309(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr1:85718332-85718333(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr1:85723129-85723130(-) m6A CDS//exon//intron       24209618//24981863//27773535//27371828//22608085
chr1:85724280-85724281(-) m6A CDS//exon       24209618//24981863//26404942//27773535//22608085
chr1:85724353-85724354(-) m6A CDS//exon       24981863//27773535//22608085
chr1:85724632-85724633(-) m6A exon//intron       24981863//27773535
chr1:85724731-85724732(-) m6A exon//intron       27371828
chr1:85725074-85725075(-) m6A CDS//exon       27371828//27773536
chr1:85725082-85725083(-) m6A CDS//exon       27371828//27773536
chr1:85725142-85725143(-) m6A CDS//exon       27773535//27371828//27773536
chr1:85725167-85725168(-) m6A CDS//exon       27773535//27371828//27773536
chr1:85725204-85725205(-) m6A CDS//exon       27773535//27371828//27773536
chr1:85725296-85725297(-) m6A CDS//exon       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate C1orf52
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-101-2-5p
Interactor2: C1orf52

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...