Detail Information

Basic Information:


  VIRBase ID:  

HHID00076084

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:           WDR36:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-101-2-5p WDR36
miRBase
Accession/Entrez ID		 MIMAT0037312 134430
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - GLC1G//TA-WDRP//TAWDRP//UTP21

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-101-2-5p
rs1189997653 chr9:4850323    C/G
rs1411860402 chr9:4850328    G/C
rs1472339708 chr9:4850325    G/A
rs374692878 chr9:4850308    T/C
rs752365347 chr9:4850320    G/C
rs758036961 chr9:4850324    C/T
rs777507775 chr9:4850326    A/G
rs570832031 chr9:4850310    G/A
rs570832031 chr9:4850310    G/T
rs766953168 chr9:4850309    C/T
rs779213487 chr9:4850315    T/C
rs894878476 chr9:4850314    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR WDR36
chr5:110463285(+) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED WDR36
chr5:110451728(+) T-C intron -    22484847
chr5:110462864(+) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase WDR36
chr5:110428070-110428071(+) m6A 5'UTR//CDS//exon       24284625//25456834//22608085
chr5:110428083-110428084(+) m6A 5'UTR//CDS//exon       24284625//25456834//22608085
chr5:110428096-110428097(+) m6A 5'UTR//CDS//exon       24284625//25456834//22608085
chr5:110428120-110428121(+) m6A 5'UTR//CDS//exon       24284625//25456834//24981863//22608085
chr5:110428216-110428217(+) m6A CDS//exon       25456834
chr5:110462507-110462508(+) m6A CDS       24981863//22608085
chr5:110462512-110462513(+) m6A CDS       24981863//22608085
chr5:110462599-110462600(+) m6A 3'UTR       24209618//24981863//22608085
chr5:110462605-110462606(+) m6A 3'UTR       24209618//24981863//22608085
chr5:110462632-110462633(+) m6A 3'UTR       24209618//24981863//22608085
chr5:110463142-110463143(+) Y 3'UTR       26075521
chr5:110463409-110463410(+) Y 3'UTR       26075521

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate WDR36
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-101-2-5p
Interactor2: WDR36

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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