Detail Information

Basic Information:


  VIRBase ID:  

HHID00076082

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:           ANTXR2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-101-2-5p ANTXR2
miRBase
Accession/Entrez ID		 MIMAT0037312 118429
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CMG-2//CMG2//HFS//ISH//JHF

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-101-2-5p
rs1189997653 chr9:4850323    C/G
rs1411860402 chr9:4850328    G/C
rs1472339708 chr9:4850325    G/A
rs374692878 chr9:4850308    T/C
rs752365347 chr9:4850320    G/C
rs758036961 chr9:4850324    C/T
rs777507775 chr9:4850326    A/G
rs570832031 chr9:4850310    G/A
rs570832031 chr9:4850310    G/T
rs766953168 chr9:4850309    C/T
rs779213487 chr9:4850315    T/C
rs894878476 chr9:4850314    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ANTXR2
chr4:80980793(-) A-I      intronic
chr4:80855581(-) A-I      intronic
chr4:80854981(-) A-I      intronic
chr4:80907156(-) A-I      intronic
chr4:80907133(-) A-I      intronic
chr4:80907058(-) A-I      intronic
chr4:80906441(-) A-I      intronic
chr4:80875446(-) A-I      intronic
chr4:80875445(-) A-I      intronic
chr4:80875429(-) A-I      intronic
chr4:80875424(-) A-I      intronic
chr4:80875423(-) A-I      intronic
chr4:80875410(-) A-I      intronic
chr4:80875405(-) A-I      intronic
chr4:80875399(-) A-I      intronic
chr4:80872644(-) A-I      intronic
chr4:80872643(-) A-I      intronic
chr4:80872571(-) A-I      intronic
chr4:80855524(-) A-I      intronic
chr4:80907168(-) A-I      intronic
chr4:80980632(-) A-I      intronic
chr4:80855070(-) A-I      intronic
chr4:80855500(-) A-I      intronic
chr4:80897244(-) A-I      intronic
chr4:80855559(-) A-I      intronic
chr4:80894758(-) A-I      intronic
chr4:80894765(-) A-I      intronic
chr4:80875681(-) A-I      intronic
chr4:80855027(-) A-I      intronic
chr4:80824135(-) A-I      3'UTR
chr4:80945658(-) A-I      intronic
chr4:80875664(-) A-I      intronic
chr4:80907092(-) A-I      intronic
chr4:80854961(-) A-I      intronic
chr4:80940301(-) A-I      intronic
chr4:80942050(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ANTXR2
chr4:80855027(-) A-G intron -    22484847
chr4:80875648(-) A-G intron -    22484847
chr4:80875664(-) A-G intron -    22484847
chr4:80875681(-) A-G intron -    22484847
chr4:80941297(-) A-G intron -    22484847
chr4:80988361(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ANTXR2
chr4:80826809-80826810(-) m6A 3'UTR       24981863//27773535
chr4:80827021-80827022(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085
chr4:80827130-80827131(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085
chr4:80827140-80827141(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085
chr4:80827170-80827171(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085
chr4:80827270-80827271(-) m6A 3'UTR       24209618//25456834//24981863//27773535//27371828//22608085
chr4:80827321-80827322(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr4:80827357-80827358(-) m6A 3'UTR//intron       24209618//24981863//27773535//22608085
chr4:80827410-80827411(-) m6A 3'UTR//intron       24209618//24981863//27773535//22608085
chr4:80827711-80827712(-) m6A 3'UTR//intron       27773535
chr4:80827789-80827790(-) m6A 3'UTR//intron       24981863//27773535
chr4:80827804-80827805(-) m6A 3'UTR//intron       24981863//27773535
chr4:80827873-80827874(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr4:80827900-80827901(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr4:80827956-80827957(-) m6A 3'UTR//exon//intron       24981863//27773535//22608085
chr4:80828175-80828176(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//22608085
chr4:80828196-80828197(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//22608085
chr4:80828216-80828217(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//27371828//22608085
chr4:80828224-80828225(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//27371828//22608085
chr4:80828230-80828231(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//27371828//22608085
chr4:80828313-80828314(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//27371828//22608085
chr4:80828327-80828328(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//27371828//22608085
chr4:80828371-80828372(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//27371828//22608085
chr4:80828406-80828407(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//22608085
chr4:80828416-80828417(-) m6A 3'UTR//exon//intron       24209618//24981863//27773535//22608085
chr4:80828607-80828608(-) m6A 3'UTR//CDS//exon       27773535
chr4:80885826-80885827(-) m6A exon//intron       27773535
chr4:80885864-80885865(-) m6A exon//intron       27773535
chr4:80899205-80899206(-) m6A 3'UTR//CDS       24981863
chr4:80899220-80899221(-) m6A 3'UTR//CDS       24981863
chr4:80899235-80899236(-) m6A 3'UTR//CDS       24981863
chr4:80899243-80899244(-) m6A 3'UTR//CDS       24981863
chr4:80993752-80993753(-) m6A 5'UTR//intron       27371828//27773536
chr4:80993889-80993890(-) m6A 5'UTR//intron       27371828//27773536//22608085
chr4:80993909-80993910(-) m6A 5'UTR//intron       24981863//27371828//27773536//22608085
chr4:80993972-80993973(-) m6A 5'UTR//intron       25456834//24981863//27371828//27773536//22608085
chr4:80993997-80993998(-) m6A 5'UTR//intron       25456834//24981863//27371828//27773536//22608085
chr4:80994042-80994043(-) m6A 5'UTR//intron       25456834//24981863//27371828//27773536//22608085
chr4:80994122-80994123(-) m6A 5'UTR//intron       24209618//25456834//24981863//27371828//27773536//22608085
chr4:80994156-80994157(-) m6A 5'UTR//intron       24209618//25456834//24981863//27371828//27773536//22608085
chr4:80994369-80994370(-) m6A intron       27371828//27773536
chr4:80994555-80994556(-) m6A 5'UTR//intron       -
chr4:80994609-80994610(-) m6A 5'UTR//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ANTXR2
Chromatin K562 cells     -
Cytosol K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-101-2-5p
Interactor2: ANTXR2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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