Detail Information

Basic Information:


  VIRBase ID:  

HHID00076079

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:           NUP210L:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-101-2-5p NUP210L
miRBase
Accession/Entrez ID		 MIMAT0037312 91181
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-101-2-5p
rs1189997653 chr9:4850323    C/G
rs1411860402 chr9:4850328    G/C
rs1472339708 chr9:4850325    G/A
rs374692878 chr9:4850308    T/C
rs752365347 chr9:4850320    G/C
rs758036961 chr9:4850324    C/T
rs777507775 chr9:4850326    A/G
rs570832031 chr9:4850310    G/A
rs570832031 chr9:4850310    G/T
rs766953168 chr9:4850309    C/T
rs779213487 chr9:4850315    T/C
rs894878476 chr9:4850314    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NUP210L
chr1:153971367(-) A-I      intronic
chr1:153971355(-) A-I      intronic
chr1:153971347(-) A-I      intronic
chr1:153971339(-) A-I      intronic
chr1:153971351(-) A-I      intronic
chr1:154104386(-) A-I      intronic
chr1:154104366(-) A-I      intronic
chr1:154073908(-) A-I      intronic
chr1:154104353(-) A-I      intronic
chr1:153980416(-) A-I      intronic
chr1:154104280(-) A-I      intronic
chr1:154100717(-) A-I      intronic
chr1:154114611(-) A-I      intronic
chr1:154100711(-) A-I      intronic
chr1:154087324(-) A-I      intronic
chr1:153980415(-) A-I      intronic
chr1:154087323(-) A-I      intronic
chr1:154087300(-) A-I      intronic
chr1:154073789(-) A-I      intronic
chr1:154073772(-) A-I      intronic
chr1:154086652(-) A-I      intronic
chr1:154106310(-) A-I      intronic
chr1:154086519(-) A-I      intronic
chr1:154104392(-) A-I      intronic
chr1:153966925(-) A-I      intronic
chr1:154109884(-) A-I      intronic
chr1:154073767(-) A-I      intronic
chr1:154048728(-) A-I      intronic
chr1:154085469(-) A-I      intronic
chr1:154087319(-) A-I      intronic
chr1:154048718(-) A-I      intronic
chr1:154035121(-) A-I      intronic
chr1:154085467(-) A-I      intronic
chr1:154124873(-) A-I      intronic
chr1:154124854(-) A-I      intronic
chr1:154124853(-) A-I      intronic
chr1:154124846(-) A-I      intronic
chr1:154122767(-) A-I      intronic
chr1:154073769(-) A-I      intronic
chr1:154083098(-) A-I      intronic
chr1:154122171(-) A-I      intronic
chr1:154066847(-) A-I      intronic
chr1:154080798(-) A-I      intronic
chr1:154102558(-) A-I      intronic
chr1:154100918(-) A-I      intronic
chr1:154051854(-) A-I      intronic
chr1:154083318(-) A-I      intronic
chr1:154122607(-) A-I      intronic
chr1:154125007(-) A-I      intronic
chr1:154122090(-) A-I      intronic
chr1:154122500(-) A-I      intronic
chr1:154066728(-) A-I      intronic
chr1:154112986(-) A-I      intronic
chr1:153969525(-) A-I      intronic
chr1:154104489(-) A-I      intronic
chr1:154103171(-) A-I      intronic
chr1:153972549(-) A-I      intronic
chr1:154124483(-) A-I      intronic
chr1:154056667(-) A-I      intronic
chr1:154097843(-) A-I      intronic
chr1:154107491(-) A-I      intronic
chr1:153981461(-) A-I      intronic
chr1:154122594(-) A-I      intronic
chr1:153971294(-) A-I      intronic
chr1:154124454(-) A-I      intronic
chr1:153977719(-) A-I      intronic
chr1:154112975(-) A-I      intronic
chr1:154056654(-) A-I      intronic
chr1:154104270(-) A-I      intronic
chr1:154062445(-) A-I      intronic
chr1:154020361(-) A-I      intronic
chr1:154103264(-) A-I      intronic
chr1:154010765(-) A-I      intronic
chr1:154122768(-) A-I      intronic
chr1:153977494(-) A-I      intronic
chr1:153977426(-) A-I      intronic
chr1:154087122(-) A-I      intronic
chr1:154124444(-) A-I      intronic
chr1:154062444(-) A-I      intronic
chr1:154122499(-) A-I      intronic
chr1:154104450(-) A-I      intronic
chr1:154103185(-) A-I      intronic
chr1:154111034(-) A-I      intronic
chr1:154125820(-) A-I      intronic
chr1:154009328(-) A-I      intronic
chr1:154097415(-) A-I      intronic
chr1:153966799(-) A-I      intronic
chr1:154104423(-) A-I      intronic
chr1:154122541(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NUP210L
chr1:153992896(-) A-I intron -    22327324
chr1:153965769(-) T-C intron -    22484847
chr1:153965921(-) T-C intron -    22484847
chr1:153966187(-) T-C intron -    22484847
chr1:153970762(-) T-C intron -    22484847
chr1:153970776(-) T-C intron -    22484847
chr1:153975732(-) T-C intron -    22484847
chr1:153976102(-) T-C intron -    22484847
chr1:153977769(-) T-C intron -    22484847
chr1:153978256(-) T-C intron -    22484847
chr1:153978400(-) T-C intron -    22484847
chr1:153978472(-) T-C intron -    22484847
chr1:153980771(-) T-C intron -    22484847
chr1:153980774(-) T-C intron -    22484847
chr1:153980816(-) T-C intron -    22484847
chr1:153980843(-) T-C intron -    22484847
chr1:153981062(-) T-C intron -    22484847
chr1:153981063(-) T-C intron -    22484847
chr1:153981072(-) T-C intron -    22484847
chr1:153982147(-) T-C intron -    22484847
chr1:153982207(-) T-C intron -    22484847
chr1:153982948(-) T-C intron -    22484847
chr1:153982967(-) T-C intron -    22484847
chr1:153982979(-) T-C intron -    22484847
chr1:153985335(-) T-C intron -    22484847
chr1:153985403(-) T-C intron -    22484847
chr1:153986305(-) T-C intron -    22484847
chr1:153986380(-) T-C intron -    22484847
chr1:153986424(-) T-C intron -    22484847
chr1:153986438(-) T-C intron -    22484847
chr1:153987230(-) T-C intron -    22484847
chr1:153988129(-) T-C intron -    22484847
chr1:153988159(-) T-C intron -    22484847
chr1:153989165(-) T-C intron -    22484847
chr1:153989677(-) T-C intron -    22484847
chr1:153992343(-) T-C intron -    22484847
chr1:153992347(-) T-C intron -    22484847
chr1:153992354(-) T-C intron -    22484847
chr1:153992357(-) T-C intron -    22484847
chr1:153992885(-) T-C intron -    22484847
chr1:153992896(-) T-C intron -    22484847
chr1:153992931(-) T-C intron -    22484847
chr1:153993103(-) T-C intron -    22484847
chr1:153993106(-) T-C intron -    22484847
chr1:153993129(-) T-C intron -    22484847
chr1:153993132(-) T-C intron -    22484847
chr1:153995414(-) T-C intron -    22484847
chr1:153995415(-) T-C intron -    22484847
chr1:154002886(-) T-C intron -    22484847
chr1:154003021(-) T-C intron -    22484847
chr1:154004297(-) T-C intron -    22484847
chr1:154004441(-) T-C intron -    22484847
chr1:154016079(-) T-C intron -    22484847
chr1:154066728(-) A-G intron -    22484847
chr1:154112837(-) T-C intron -    22484847
chr1:154124483(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NUP210L
chr1:153965165-153965166(-) m6A 3'UTR       27773535
chr1:153965199-153965200(-) m6A 3'UTR       27773535
chr1:153965298-153965299(-) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NUP210L
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-101-2-5p
Interactor2: NUP210L

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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