Basic Information:

  VIRBase ID:  

HHID00076077

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:  MIMAT0037312          C8orf76:  NM_032847     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-101-2-5p	C8orf76
miRBase Accession/Entrez ID	MIMAT0037312	84933
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-101-2-5p	rs1189997653 chr9:4850323    C/G rs1411860402 chr9:4850328    G/C rs1472339708 chr9:4850325    G/A rs374692878 chr9:4850308    T/C rs752365347 chr9:4850320    G/C rs758036961 chr9:4850324    C/T rs777507775 chr9:4850326    A/G rs570832031 chr9:4850310    G/A rs570832031 chr9:4850310    G/T rs766953168 chr9:4850309    C/T rs779213487 chr9:4850315    T/C rs894878476 chr9:4850314    A/G

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	C8orf76	chr8:124235748(-) A-I      intronic chr8:124235740(-) A-I      intronic chr8:124233754(-) A-I      intronic chr8:124242094(-) A-I      intronic chr8:124242125(-) A-I      intronic chr8:124233768(-) A-I      intronic chr8:124233791(-) A-I      intronic chr8:124233949(-) A-I      intronic chr8:124242091(-) A-I      intronic chr8:124240737(-) A-I      intronic chr8:124240735(-) A-I      intronic chr8:124234054(-) A-I      intronic chr8:124240727(-) A-I      intronic chr8:124245486(-) A-I      intronic chr8:124245697(-) A-I      intronic chr8:124245711(-) A-I      intronic chr8:124240724(-) A-I      intronic chr8:124245763(-) A-I      intronic chr8:124240692(-) A-I      intronic chr8:124238072(-) A-I      intronic chr8:124237946(-) A-I      intronic chr8:124237497(-) A-I      intronic chr8:124237448(-) A-I      intronic chr8:124237435(-) A-I      intronic chr8:124236703(-) A-I      intronic chr8:124236680(-) A-I      intronic chr8:124236649(-) A-I      intronic chr8:124235772(-) A-I      intronic chr8:124243038(-) A-I      intronic chr8:124243014(-) A-I      intronic chr8:124237351(-) A-I      intronic chr8:124237342(-) A-I      intronic chr8:124242802(-) A-I      intronic chr8:124243054(-) A-I      intronic chr8:124242174(-) A-I      intronic chr8:124246144(-) A-I      intronic chr8:124246146(-) A-I      intronic chr8:124243160(-) A-I      intronic chr8:124246156(-) A-I      intronic chr8:124246168(-) A-I      intronic chr8:124246774(-) A-I      intronic chr8:124246788(-) A-I      intronic chr8:124246829(-) A-I      intronic chr8:124246839(-) A-I      intronic chr8:124235726(-) A-I      intronic chr8:124237424(-) A-I      intronic chr8:124236769(-) A-I      intronic chr8:124235704(-) A-I      intronic chr8:124235693(-) A-I      intronic chr8:124234505(-) A-I      intronic chr8:124234473(-) A-I      intronic chr8:124234448(-) A-I      intronic chr8:124234305(-) A-I      intronic chr8:124234301(-) A-I      intronic chr8:124246843(-) A-I      intronic chr8:124246846(-) A-I      intronic chr8:124246962(-) A-I      intronic chr8:124248908(-) A-I      intronic chr8:124234117(-) A-I      intronic chr8:124251535(-) A-I      intronic chr8:124245472(-) A-I      intronic chr8:124242850(-) A-I      intronic chr8:124251586(-) A-I      intronic chr8:124251577(-) A-I      intronic chr8:124236800(-) A-I      intronic chr8:124236724(-) A-I      intronic chr8:124236720(-) A-I      intronic chr8:124236647(-) A-I      intronic chr8:124233610(-) A-I      intronic chr8:124243068(-) A-I      intronic chr8:124233736(-) A-I      intronic chr8:124237999(-) A-I      intronic chr8:124242987(-) A-I      intronic chr8:124246909(-) A-I      intronic chr8:124246761(-) A-I      intronic chr8:124243122(-) A-I      intronic chr8:124242958(-) A-I      intronic chr8:124237410(-) A-I      intronic chr8:124245773(-) A-I      intronic chr8:124240796(-) A-I      intronic chr8:124235663(-) A-I      intronic chr8:124243220(-) A-I      intronic chr8:124243106(-) A-I      intronic chr8:124246224(-) A-I      intronic chr8:124245767(-) A-I      intronic chr8:124234296(-) A-I      intronic chr8:124245996(-) A-I      intronic chr8:124237498(-) A-I      intronic chr8:124236708(-) A-I      intronic chr8:124238108(-) A-I      intronic chr8:124236736(-) A-I      intronic chr8:124234264(-) A-I      intronic chr8:124233743(-) A-I      intronic chr8:124236684(-) A-I      intronic chr8:124235804(-) A-I      intronic chr8:124236829(-) A-I      intronic chr8:124252026(-) A-I      intronic chr8:124247119(-) A-I      intronic chr8:124233631(-) A-I      intronic chr8:124246792(-) A-I      intronic chr8:124242170(-) A-I      intronic chr8:124243310(-) A-I      intronic chr8:124251578(-) A-I      intronic chr8:124237384(-) A-I      intronic chr8:124236854(-) A-I      intronic chr8:124237295(-) A-I      intronic chr8:124243311(-) A-I      intronic chr8:124233670(-) A-I      intronic chr8:124245840(-) A-I      intronic chr8:124246025(-) A-I      intronic chr8:124237993(-) A-I      intronic chr8:124237520(-) A-I      intronic chr8:124236634(-) A-I      intronic chr8:124240697(-) A-I      intronic chr8:124233926(-) A-I      intronic chr8:124243018(-) A-I      intronic chr8:124236686(-) A-I      intronic chr8:124243064(-) A-I      intronic chr8:124233961(-) A-I      intronic chr8:124238102(-) A-I      intronic chr8:124251584(-) A-I      intronic chr8:124242193(-) A-I      intronic chr8:124245358(-) A-I      intronic chr8:124245901(-) A-I      intronic chr8:124236607(-) A-I      intronic chr8:124245430(-) A-I      intronic chr8:124236633(-) A-I      intronic chr8:124242967(-) A-I      intronic chr8:124233927(-) A-I      intronic chr8:124234135(-) A-I      intronic chr8:124246012(-) A-I      intronic chr8:124233617(-) A-I      intronic chr8:124236752(-) A-I      intronic chr8:124243001(-) A-I      intronic chr8:124245346(-) A-I      intronic chr8:124242995(-) A-I      intronic chr8:124243161(-) A-I      intronic chr8:124233903(-) A-I      intronic chr8:124252041(-) A-I      intronic chr8:124236744(-) A-I      intronic chr8:124245462(-) A-I      intronic chr8:124246758(-) A-I      intronic chr8:124240820(-) A-I      intronic chr8:124242854(-) A-I      intronic chr8:124245731(-) A-I      intronic chr8:124237361(-) A-I      intronic chr8:124233578(-) A-I      intronic chr8:124236770(-) A-I      intronic chr8:124245409(-) A-I      intronic chr8:124237413(-) A-I      intronic chr8:124245425(-) A-I      intronic chr8:124234393(-) A-I      intronic chr8:124246079(-) A-I      intronic chr8:124245357(-) A-I      intronic chr8:124243117(-) A-I      intronic chr8:124252011(-) A-I      intronic chr8:124245508(-) A-I      intronic chr8:124237962(-) A-I      intronic chr8:124242768(-) A-I      intronic chr8:124240616(-) A-I      intronic chr8:124242171(-) A-I      intronic chr8:124242886(-) A-I      intronic chr8:124245839(-) A-I      intronic chr8:124246885(-) A-I      intronic chr8:124233928(-) A-I      intronic chr8:124243284(-) A-I      intronic chr8:124242181(-) A-I      intronic chr8:124242237(-) A-I      intronic chr8:124243114(-) A-I      intronic chr8:124245732(-) A-I      intronic chr8:124236648(-) A-I      intronic chr8:124246860(-) A-I      intronic chr8:124234289(-) A-I      intronic chr8:124251517(-) A-I      intronic chr8:124236730(-) A-I      intronic chr8:124236757(-) A-I      intronic chr8:124242788(-) A-I      intronic chr8:124233948(-) A-I      intronic chr8:124245429(-) A-I      intronic chr8:124240694(-) A-I      intronic chr8:124242135(-) A-I      intronic chr8:124246897(-) A-I      intronic chr8:124233576(-) A-I      intronic chr8:124233814(-) A-I      intronic chr8:124246024(-) A-I      intronic chr8:124243324(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	C8orf76	chr8:124233631(-) A-I intron -    15342557 chr8:124233670(-) A-I intron -    15342557   //15258596 chr8:124233927(-) A-I intron -    15342557   //15258596 chr8:124233948(-) A-I intron -    15342557   //15258596 chr8:124234097(-) A-I intron -    15342557   //15258596 chr8:124234105(-) A-I intron -    15342557   //15258596 chr8:124234562(-) A-I intron -    15342557 chr8:124234812(-) A-I intron -    15342557 chr8:124236686(-) A-I intron -    22327324 chr8:124233670(-) A-G intron -    22484847 chr8:124233926(-) A-G intron -    22484847 chr8:124233927(-) A-G intron -    22484847 chr8:124233948(-) A-G intron -    22484847 chr8:124234097(-) A-G intron -    22484847 chr8:124234130(-) A-G intron -    22484847 chr8:124234296(-) A-G intron -    22484847 chr8:124236609(-) T-A intron -    22484847 chr8:124236633(-) A-G intron -    22484847 chr8:124236684(-) A-G intron -    22484847 chr8:124236686(-) A-G intron -    22484847 chr8:124236730(-) A-G intron -    22484847 chr8:124236736(-) A-G intron -    22484847 chr8:124236752(-) A-G intron -    22484847 chr8:124236829(-) A-G intron -    22484847 chr8:124237361(-) A-G intron -    22484847 chr8:124237362(-) A-G intron -    22484847 chr8:124237394(-) A-G intron -    22484847 chr8:124237410(-) A-G intron -    22484847 chr8:124238108(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	C8orf76	chr8:124232226-124232227(-) m6A 3'UTR       27773535 chr8:124232278-124232279(-) m6A 3'UTR       27773535 chr8:124232323-124232324(-) m6A 3'UTR       27773535 chr8:124232328-124232329(-) m6A 3'UTR       27773535 chr8:124232397-124232398(-) m6A CDS       24981863//27773535 chr8:124232421-124232422(-) m6A CDS       24981863//27773535 chr8:124238491-124238492(-) m6A intron       27773535 chr8:124238548-124238549(-) m6A intron       24284625//27773535 chr8:124238634-124238635(-) m6A exon//intron       24284625//27773535 chr8:124238761-124238762(-) m6A CDS//exon       24209618//27773535//22608085 chr8:124238810-124238811(-) m6A CDS//exon       24284625//24209618//27773535//22608085 chr8:124238818-124238819(-) m6A CDS//exon       24284625//24209618//27773535//22608085 chr8:124238840-124238841(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085 chr8:124243543-124243544(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr8:124243576-124243577(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr8:124243591-124243592(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr8:124243614-124243615(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr8:124243699-124243700(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr8:124243722-124243723(-) m6A CDS//exon//intron       24284625//24209618//24981863//27773535//22608085 chr8:124243756-124243757(-) m6A CDS//exon//intron       24284625//24209618//24981863//22608085 chr8:124243784-124243785(-) m6A CDS//exon//intron       24284625//24209618//24981863//22608085 chr8:124243857-124243858(-) m6A CDS//exon//intron       24284625//24209618//24981863//22608085 chr8:124243889-124243890(-) m6A CDS//exon//intron       24284625//24209618//24981863//22608085 chr8:124243909-124243910(-) m6A CDS//exon//intron       24284625//24209618//24981863//22608085 chr8:124243920-124243921(-) m6A CDS//exon//intron       24284625//24209618//24981863//22608085 chr8:124243974-124243975(-) m6A CDS//exon       22608085 chr8:124251489-124251490(-) m1A exon//intron       26863196

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	C8orf76	Chromatin K562 cells     - Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-101-2-5p
Interactor2: C8orf76

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.