Basic Information:

  VIRBase ID:  

HHID00076074

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:  MIMAT0037312          FAR1:  NM_032228     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-101-2-5p	FAR1
miRBase Accession/Entrez ID	MIMAT0037312	84188
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	MLSTD2//PFCRD//SDR10E1

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-101-2-5p	rs1189997653 chr9:4850323    C/G rs1411860402 chr9:4850328    G/C rs1472339708 chr9:4850325    G/A rs374692878 chr9:4850308    T/C rs752365347 chr9:4850320    G/C rs758036961 chr9:4850324    C/T rs777507775 chr9:4850326    A/G rs570832031 chr9:4850310    G/A rs570832031 chr9:4850310    G/T rs766953168 chr9:4850309    C/T rs779213487 chr9:4850315    T/C rs894878476 chr9:4850314    A/G

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FAR1	chr11:13694038(+) A-I      intronic chr11:13738681(+) A-I      intronic chr11:13743110(+) A-I      5'UTR chr11:13694033(+) A-I      intronic chr11:13720049(+) A-I      intronic chr11:13725506(+) A-I      intronic chr11:13694047(+) A-I      intronic chr11:13724843(+) A-I      intronic chr11:13694044(+) A-I      intronic chr11:13711527(+) A-I      intronic chr11:13744258(+) A-I      intronic chr11:13724790(+) A-I      intronic chr11:13711526(+) A-I      intronic chr11:13711523(+) A-I      intronic chr11:13725435(+) A-I      intronic chr11:13725415(+) A-I      intronic chr11:13704676(+) A-I      intronic chr11:13744827(+) A-I      intronic chr11:13725536(+) A-I      intronic chr11:13725336(+) A-I      intronic chr11:13724805(+) A-I      intronic chr11:13725440(+) A-I      intronic chr11:13725574(+) A-I      intronic chr11:13704256(+) A-I      intronic chr11:13704711(+) A-I      intronic chr11:13704289(+) A-I      intronic chr11:13746022(+) A-I      intronic chr11:13724878(+) A-I      intronic chr11:13704685(+) A-I      intronic chr11:13711606(+) A-I      intronic chr11:13745833(+) A-I      intronic chr11:13725441(+) A-I      intronic chr11:13744150(+) A-I      intronic chr11:13744146(+) A-I      intronic chr11:13744138(+) A-I      intronic chr11:13704255(+) A-I      intronic chr11:13744125(+) A-I      intronic chr11:13704684(+) A-I      intronic chr11:13744121(+) A-I      intronic chr11:13744084(+) A-I      intronic chr11:13724810(+) A-I      intronic chr11:13744076(+) A-I      intronic chr11:13704305(+) A-I      intronic chr11:13729677(+) A-I      intronic chr11:13725576(+) A-I      intronic chr11:13725546(+) A-I      intronic chr11:13724897(+) A-I      intronic chr11:13724794(+) A-I      intronic chr11:13725438(+) A-I      intronic chr11:13725511(+) A-I      intronic chr11:13725414(+) A-I      intronic chr11:13693888(+) A-I      intronic chr11:13724870(+) A-I      intronic chr11:13725541(+) A-I      intronic chr11:13704175(+) A-I      intronic chr11:13725335(+) A-I      intronic chr11:13724773(+) A-I      intronic chr11:13744730(+) A-I      intronic chr11:13729876(+) A-I      intronic chr11:13724848(+) A-I      intronic chr11:13725362(+) A-I      intronic chr11:13744226(+) A-I      intronic chr11:13693895(+) A-I      intronic chr11:13744645(+) A-I      intronic chr11:13724779(+) A-I      intronic chr11:13725444(+) A-I      intronic chr11:13704846(+) A-I      intronic chr11:13718894(+) A-I      intronic chr11:13725471(+) A-I      intronic chr11:13720114(+) A-I      intronic chr11:13725371(+) A-I      intronic chr11:13729678(+) A-I      intronic chr11:13729814(+) A-I      intronic chr11:13718862(+) A-I      intronic chr11:13724795(+) A-I      intronic chr11:13744045(+) A-I      intronic chr11:13744805(+) A-I      intronic chr11:13744085(+) A-I      intronic chr11:13724766(+) A-I      intronic chr11:13744218(+) A-I      intronic chr11:13744801(+) A-I      intronic chr11:13718898(+) A-I      intronic chr11:13724876(+) A-I      intronic chr11:13745976(+) A-I      intronic chr11:13744832(+) A-I      intronic chr11:13704819(+) A-I      intronic chr11:13744204(+) A-I      intronic chr11:13724760(+) A-I      intronic chr11:13725439(+) A-I      intronic chr11:13725462(+) A-I      intronic chr11:13744147(+) A-I      intronic chr11:13724831(+) A-I      intronic chr11:13704789(+) A-I      intronic chr11:13704861(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FAR1	chr11:13724766(+) A-I intron -    22327324 chr11:13725462(+) A-I intron -    22327324 chr11:13725471(+) A-I intron -    22327324 chr11:13724752(+) A-I intron -    21960545 chr11:13724870(+) A-I intron -    21960545 chr11:13724878(+) A-I intron -    21960545 chr11:13724760(+) A-G intron -    22484847 chr11:13724766(+) A-G intron -    22484847 chr11:13724795(+) A-G intron -    22484847 chr11:13724805(+) A-G intron -    22484847 chr11:13724870(+) A-G intron -    22484847 chr11:13724878(+) A-G intron -    22484847 chr11:13725439(+) A-G intron -    22484847 chr11:13725462(+) A-G intron -    22484847 chr11:13725471(+) A-G intron -    22484847 chr11:13725536(+) A-G intron -    22484847 chr11:13725541(+) A-G intron -    22484847 chr11:13725574(+) A-G intron -    22484847 chr11:13744805(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FAR1	chr11:13732289-13732290(+) m6A CDS//exon       24981863//26404942 chr11:13732356-13732357(+) m6A CDS//exon       24981863 chr11:13749151-13749152(+) m6A CDS       24284625 chr11:13749165-13749166(+) m6A CDS       24284625 chr11:13749218-13749219(+) m6A CDS       24284625 chr11:13749226-13749227(+) m6A CDS       24284625 chr11:13750323-13750324(+) m6A 3'UTR       24284625//24981863 chr11:13750343-13750344(+) m6A 3'UTR       24981863 chr11:13750590-13750591(+) m6A 3'UTR       24981863//26404942 chr11:13750610-13750611(+) m6A 3'UTR       24981863//26404942 chr11:13750641-13750642(+) m6A 3'UTR       24981863//26404942 chr11:13751341-13751342(+) m6A 3'UTR       24981863 chr11:13751429-13751430(+) m6A 3'UTR       24981863 chr11:13751459-13751460(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FAR1	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-101-2-5p
Interactor2: FAR1

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.