Basic Information:

  VIRBase ID:  

HHID00076073

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:  MIMAT0037312          ARID5B:  NM_001244638     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-101-2-5p	ARID5B
miRBase Accession/Entrez ID	MIMAT0037312	84159
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	DESRT//MRF-2//MRF2

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-101-2-5p	rs1189997653 chr9:4850323    C/G rs1411860402 chr9:4850328    G/C rs1472339708 chr9:4850325    G/A rs374692878 chr9:4850308    T/C rs752365347 chr9:4850320    G/C rs758036961 chr9:4850324    C/T rs777507775 chr9:4850326    A/G rs570832031 chr9:4850310    G/A rs570832031 chr9:4850310    G/T rs766953168 chr9:4850309    C/T rs779213487 chr9:4850315    T/C rs894878476 chr9:4850314    A/G

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	ARID5B	chr10:63846561(+) A-I      intronic chr10:63847769(+) A-I      intronic chr10:63847781(+) A-I      intronic chr10:63849452(+) A-I      intronic chr10:63849470(+) A-I      intronic chr10:63846508(+) A-I      intronic chr10:63846504(+) A-I      intronic chr10:63846553(+) A-I      intronic chr10:63846512(+) A-I      intronic chr10:63849496(+) A-I      intronic chr10:63709285(+) A-I      intronic chr10:63668342(+) A-I      intronic chr10:63668356(+) A-I      intronic chr10:63709281(+) A-I      intronic chr10:63849444(+) A-I      intronic chr10:63739773(+) A-I      intronic chr10:63849428(+) A-I      intronic chr10:63849426(+) A-I      intronic chr10:63710348(+) A-I      intronic chr10:63825533(+) A-I      intronic chr10:63849416(+) A-I      intronic chr10:63849387(+) A-I      intronic chr10:63849386(+) A-I      intronic chr10:63849373(+) A-I      intronic chr10:63675608(+) A-I      intronic chr10:63849331(+) A-I      intronic chr10:63847806(+) A-I      intronic chr10:63847776(+) A-I      intronic chr10:63847757(+) A-I      intronic chr10:63847741(+) A-I      intronic chr10:63847728(+) A-I      intronic chr10:63847688(+) A-I      intronic chr10:63847687(+) A-I      intronic chr10:63847667(+) A-I      intronic chr10:63847647(+) A-I      intronic chr10:63847040(+) A-I      intronic chr10:63847023(+) A-I      intronic chr10:63846983(+) A-I      intronic chr10:63846951(+) A-I      intronic chr10:63846943(+) A-I      intronic chr10:63675589(+) A-I      intronic chr10:63846937(+) A-I      intronic chr10:63846911(+) A-I      intronic chr10:63824807(+) A-I      intronic chr10:63846897(+) A-I      intronic chr10:63846896(+) A-I      intronic chr10:63846895(+) A-I      intronic chr10:63846873(+) A-I      intronic chr10:63846371(+) A-I      intronic chr10:63846339(+) A-I      intronic chr10:63846317(+) A-I      intronic chr10:63846313(+) A-I      intronic chr10:63846307(+) A-I      intronic chr10:63846300(+) A-I      intronic chr10:63846297(+) A-I      intronic chr10:63846283(+) A-I      intronic chr10:63846273(+) A-I      intronic chr10:63846120(+) A-I      intronic chr10:63846094(+) A-I      intronic chr10:63840836(+) A-I      intronic chr10:63840824(+) A-I      intronic chr10:63840721(+) A-I      intronic chr10:63840707(+) A-I      intronic chr10:63824785(+) A-I      intronic chr10:63824674(+) A-I      intronic chr10:63824594(+) A-I      intronic chr10:63795379(+) A-I      intronic chr10:63772238(+) A-I      intronic chr10:63772224(+) A-I      intronic chr10:63751712(+) A-I      intronic chr10:63751671(+) A-I      intronic chr10:63751664(+) A-I      intronic chr10:63751662(+) A-I      intronic chr10:63751644(+) A-I      intronic chr10:63707128(+) A-I      intronic chr10:63709237(+) A-I      intronic chr10:63668432(+) A-I      intronic chr10:63830850(+) A-I      intronic chr10:63739767(+) A-I      intronic chr10:63668412(+) A-I      intronic chr10:63668404(+) A-I      intronic chr10:63668392(+) A-I      intronic chr10:63668381(+) A-I      intronic chr10:63739745(+) A-I      intronic chr10:63721697(+) A-I      intronic chr10:63721682(+) A-I      intronic chr10:63776992(+) A-I      intronic chr10:63721537(+) A-I      intronic chr10:63715539(+) A-I      intronic chr10:63706433(+) A-I      intronic chr10:63715479(+) A-I      intronic chr10:63668380(+) A-I      intronic chr10:63714654(+) A-I      intronic chr10:63668373(+) A-I      intronic chr10:63706529(+) A-I      intronic chr10:63714626(+) A-I      intronic chr10:63714556(+) A-I      intronic chr10:63849432(+) A-I      intronic chr10:63678536(+) A-I      intronic chr10:63709262(+) A-I      intronic chr10:63668371(+) A-I      intronic chr10:63668312(+) A-I      intronic chr10:63715593(+) A-I      intronic chr10:63714615(+) A-I      intronic chr10:63846805(+) A-I      intronic chr10:63748924(+) A-I      intronic chr10:63714614(+) A-I      intronic chr10:63714579(+) A-I      intronic chr10:63837977(+) A-I      intronic chr10:63710358(+) A-I      intronic chr10:63710344(+) A-I      intronic chr10:63710268(+) A-I      intronic chr10:63710244(+) A-I      intronic chr10:63710242(+) A-I      intronic chr10:63710229(+) A-I      intronic chr10:63710227(+) A-I      intronic chr10:63709308(+) A-I      intronic chr10:63836043(+) A-I      intronic chr10:63710226(+) A-I      intronic chr10:63710195(+) A-I      intronic chr10:63710189(+) A-I      intronic chr10:63710156(+) A-I      intronic chr10:63709964(+) A-I      intronic chr10:63709950(+) A-I      intronic chr10:63709908(+) A-I      intronic chr10:63709896(+) A-I      intronic chr10:63709893(+) A-I      intronic chr10:63709267(+) A-I      intronic chr10:63709265(+) A-I      intronic chr10:63709241(+) A-I      intronic chr10:63709239(+) A-I      intronic chr10:63709220(+) A-I      intronic chr10:63788722(+) A-I      intronic chr10:63709210(+) A-I      intronic chr10:63709197(+) A-I      intronic chr10:63696221(+) A-I      intronic chr10:63707153(+) A-I      intronic chr10:63710318(+) A-I      intronic chr10:63708230(+) A-I      intronic chr10:63709147(+) A-I      intronic chr10:63708399(+) A-I      intronic chr10:63708278(+) A-I      intronic chr10:63825490(+) A-I      intronic chr10:63708267(+) A-I      intronic chr10:63708243(+) A-I      intronic chr10:63675783(+) A-I      intronic chr10:63849477(+) A-I      intronic chr10:63707131(+) A-I      intronic chr10:63707127(+) A-I      intronic chr10:63707078(+) A-I      intronic chr10:63706601(+) A-I      intronic chr10:63706559(+) A-I      intronic chr10:63836181(+) A-I      intronic chr10:63706533(+) A-I      intronic chr10:63706522(+) A-I      intronic chr10:63706484(+) A-I      intronic chr10:63709375(+) A-I      intronic chr10:63706465(+) A-I      intronic chr10:63706509(+) A-I      intronic chr10:63706427(+) A-I      intronic chr10:63706404(+) A-I      intronic chr10:63692745(+) A-I      intronic chr10:63710017(+) A-I      intronic chr10:63692282(+) A-I      intronic chr10:63714537(+) A-I      intronic chr10:63692263(+) A-I      intronic chr10:63682268(+) A-I      intronic chr10:63846401(+) A-I      intronic chr10:63682231(+) A-I      intronic chr10:63682215(+) A-I      intronic chr10:63681675(+) A-I      intronic chr10:63681626(+) A-I      intronic chr10:63681624(+) A-I      intronic chr10:63678686(+) A-I      intronic chr10:63846552(+) A-I      intronic chr10:63846575(+) A-I      intronic chr10:63710278(+) A-I      intronic chr10:63678678(+) A-I      intronic chr10:63678643(+) A-I      intronic chr10:63678640(+) A-I      intronic chr10:63678637(+) A-I      intronic chr10:63678632(+) A-I      intronic chr10:63678631(+) A-I      intronic chr10:63777166(+) A-I      intronic chr10:63677237(+) A-I      intronic chr10:63675689(+) A-I      intronic chr10:63675656(+) A-I      intronic chr10:63675615(+) A-I      intronic chr10:63675610(+) A-I      intronic chr10:63846380(+) A-I      intronic chr10:63682241(+) A-I      intronic chr10:63675538(+) A-I      intronic chr10:63715441(+) A-I      intronic chr10:63675594(+) A-I      intronic chr10:63709276(+) A-I      intronic chr10:63825458(+) A-I      intronic chr10:63676826(+) A-I      intronic chr10:63709235(+) A-I      intronic chr10:63836249(+) A-I      intronic chr10:63675563(+) A-I      intronic chr10:63836041(+) A-I      intronic chr10:63715571(+) A-I      intronic chr10:63709967(+) A-I      intronic chr10:63714605(+) A-I      intronic chr10:63741166(+) A-I      intronic chr10:63676794(+) A-I      intronic chr10:63677204(+) A-I      intronic chr10:63706515(+) A-I      intronic chr10:63706519(+) A-I      intronic chr10:63714580(+) A-I      intronic chr10:63840682(+) A-I      intronic chr10:63707260(+) A-I      intronic chr10:63706470(+) A-I      intronic chr10:63706573(+) A-I      intronic chr10:63718058(+) A-I      intronic chr10:63681680(+) A-I      intronic chr10:63669346(+) A-I      intronic chr10:63826901(+) A-I      intronic chr10:63708265(+) A-I      intronic chr10:63846115(+) A-I      intronic chr10:63709892(+) A-I      intronic chr10:63739705(+) A-I      intronic chr10:63777050(+) A-I      intronic chr10:63709906(+) A-I      intronic chr10:63706426(+) A-I      intronic chr10:63847809(+) A-I      intronic chr10:63846206(+) A-I      intronic chr10:63849487(+) A-I      intronic chr10:63846110(+) A-I      intronic chr10:63847672(+) A-I      intronic chr10:63846392(+) A-I      intronic chr10:63847643(+) A-I      intronic chr10:63826944(+) A-I      intronic chr10:63739675(+) A-I      intronic chr10:63709846(+) A-I      intronic chr10:63709273(+) A-I      intronic chr10:63826961(+) A-I      intronic chr10:63708226(+) A-I      intronic chr10:63707154(+) A-I      intronic chr10:63777091(+) A-I      intronic chr10:63775563(+) A-I      intronic chr10:63707132(+) A-I      intronic chr10:63847763(+) A-I      intronic chr10:63709867(+) A-I      intronic chr10:63710269(+) A-I      intronic chr10:63825474(+) A-I      intronic chr10:63847826(+) A-I      intronic chr10:63709275(+) A-I      intronic chr10:63676789(+) A-I      intronic chr10:63847823(+) A-I      intronic chr10:63847800(+) A-I      intronic chr10:63708307(+) A-I      intronic chr10:63707259(+) A-I      intronic chr10:63709311(+) A-I      intronic chr10:63849343(+) A-I      intronic chr10:63777163(+) A-I      intronic chr10:63709217(+) A-I      intronic chr10:63838127(+) A-I      intronic chr10:63706635(+) A-I      intronic chr10:63710308(+) A-I      intronic chr10:63682344(+) A-I      intronic chr10:63707213(+) A-I      intronic chr10:63846878(+) A-I      intronic chr10:63708356(+) A-I      intronic chr10:63676865(+) A-I      intronic chr10:63846804(+) A-I      intronic chr10:63847765(+) A-I      intronic chr10:63710282(+) A-I      intronic chr10:63710279(+) A-I      intronic chr10:63710322(+) A-I      intronic chr10:63706569(+) A-I      intronic chr10:63710179(+) A-I      intronic chr10:63709866(+) A-I      intronic chr10:63846116(+) A-I      intronic chr10:63706498(+) A-I      intronic chr10:63708229(+) A-I      intronic chr10:63678514(+) A-I      intronic chr10:63709947(+) A-I      intronic chr10:63836266(+) A-I      intronic chr10:63710172(+) A-I      intronic chr10:63775438(+) A-I      intronic chr10:63775406(+) A-I      intronic chr10:63709884(+) A-I      intronic chr10:63676827(+) A-I      intronic chr10:63846205(+) A-I      intronic chr10:63707258(+) A-I      intronic chr10:63825494(+) A-I      intronic chr10:63678672(+) A-I      intronic chr10:63706628(+) A-I      intronic chr10:63767957(+) A-I      intronic chr10:63828677(+) A-I      intronic chr10:63709138(+) A-I      intronic chr10:63847815(+) A-I      intronic chr10:63714604(+) A-I      intronic chr10:63681659(+) A-I      intronic chr10:63802645(+) A-I      intronic chr10:63824662(+) A-I      intronic chr10:63777104(+) A-I      intronic chr10:63710246(+) A-I      intronic chr10:63714601(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	ARID5B	chr10:63849343(+) A-I intron -    21960545 chr10:63686697(+) A-G intron -    22484847 chr10:63686710(+) A-G intron -    22484847 chr10:63686746(+) A-G intron -    22484847 chr10:63686747(+) A-G intron -    22484847 chr10:63686748(+) A-G intron -    22484847 chr10:63676826(+) A-G intron -    22484847 chr10:63682344(+) A-G intron -    22484847 chr10:63708229(+) A-G intron -    22484847 chr10:63708230(+) A-G intron -    22484847 chr10:63709217(+) A-G intron -    22484847 chr10:63709262(+) A-G intron -    22484847 chr10:63709275(+) A-G intron -    22484847 chr10:63709276(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	ARID5B	chr10:63661946-63661947(+) m6A CDS       24981863 chr10:63661991-63661992(+) m6A CDS       24981863 chr10:63816952-63816953(+) m6A CDS       24981863 chr10:63816991-63816992(+) m6A CDS       24981863 chr10:63845523-63845524(+) m6A CDS       24981863//27773535 chr10:63845532-63845533(+) m6A CDS       24284625//24981863//27773535 chr10:63845540-63845541(+) m6A CDS       24284625//24981863//27773535 chr10:63845561-63845562(+) m6A CDS       24284625//24981863//27773535//22608085 chr10:63845566-63845567(+) m6A CDS       24284625//24981863//27773535//22608085 chr10:63845581-63845582(+) m6A CDS       24284625//24981863//27773535//22608085 chr10:63845595-63845596(+) m6A CDS       24284625//24981863//27773535//22608085 chr10:63850643-63850644(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:63850650-63850651(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:63850696-63850697(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:63850759-63850760(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:63850771-63850772(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:63850779-63850780(+) m6A CDS       24284625//24209618//24981863//27773535//22608085 chr10:63850904-63850905(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:63850936-63850937(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:63850943-63850944(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:63850955-63850956(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:63850988-63850989(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63851041-63851042(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63851066-63851067(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63851113-63851114(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63851154-63851155(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr10:63851197-63851198(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr10:63851203-63851204(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr10:63851227-63851228(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr10:63851234-63851235(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr10:63851384-63851385(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:63851424-63851425(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:63851523-63851524(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:63851552-63851553(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:63851657-63851658(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63851747-63851748(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63851774-63851775(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63851800-63851801(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63851821-63851822(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63851843-63851844(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63851893-63851894(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:63851959-63851960(+) m6A CDS       24284625//24209618//24981863//26404942//22608085 chr10:63851969-63851970(+) m6A CDS       24284625//24209618//24981863//26404942//22608085 chr10:63852067-63852068(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr10:63852152-63852153(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr10:63852167-63852168(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr10:63852183-63852184(+) Am CDS       - chr10:63852235-63852236(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr10:63852280-63852281(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr10:63852325-63852326(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr10:63852544-63852545(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63852549-63852550(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63852647-63852648(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63852688-63852689(+) m6A CDS       24284625//24209618//24981863//22575960//22608085 chr10:63852782-63852783(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085 chr10:63852938-63852939(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960//22608085 chr10:63852958-63852959(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960//22608085 chr10:63852975-63852976(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960//22608085 chr10:63853086-63853087(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:63853095-63853096(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:63853123-63853124(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:63853173-63853174(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:63853181-63853182(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:63853215-63853216(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr10:63853251-63853252(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr10:63853284-63853285(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr10:63853301-63853302(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr10:63853338-63853339(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr10:63853604-63853605(+) m6A 3'UTR       26404942 chr10:63853619-63853620(+) m6A 3'UTR       26404942 chr10:63853803-63853804(+) m6A 3'UTR       24981863 chr10:63853832-63853833(+) m6A 3'UTR       24981863 chr10:63853838-63853839(+) m6A 3'UTR       24981863 chr10:63853882-63853883(+) m6A 3'UTR       24981863 chr10:63855001-63855002(+) m6A 3'UTR       24981863//26404942 chr10:63855049-63855050(+) m6A 3'UTR       24981863//26404942 chr10:63855067-63855068(+) m6A 3'UTR       24981863//26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ARID5B	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-101-2-5p
Interactor2: ARID5B

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.