Basic Information:

  VIRBase ID:  

HHID00076069

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:  MIMAT0037312          TRAPPC13:  NM_001365342     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-101-2-5p	TRAPPC13
miRBase Accession/Entrez ID	MIMAT0037312	80006
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	C5orf44//SHLD3

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-101-2-5p	rs1189997653 chr9:4850323    C/G rs1411860402 chr9:4850328    G/C rs1472339708 chr9:4850325    G/A rs374692878 chr9:4850308    T/C rs752365347 chr9:4850320    G/C rs758036961 chr9:4850324    C/T rs777507775 chr9:4850326    A/G rs570832031 chr9:4850310    G/A rs570832031 chr9:4850310    G/T rs766953168 chr9:4850309    C/T rs779213487 chr9:4850315    T/C rs894878476 chr9:4850314    A/G

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TRAPPC13	chr5:64924706(+) A-I      intronic chr5:64938056(+) A-I      intronic chr5:64938030(+) A-I      intronic chr5:64937990(+) A-I      intronic chr5:64937989(+) A-I      intronic chr5:64937979(+) A-I      intronic chr5:64936841(+) A-I      intronic chr5:64933311(+) A-I      intronic chr5:64933281(+) A-I      intronic chr5:64932107(+) A-I      intronic chr5:64932045(+) A-I      intronic chr5:64922963(+) A-I      intronic chr5:64922961(+) A-I      intronic chr5:64922904(+) A-I      intronic chr5:64922865(+) A-I      intronic chr5:64922824(+) A-I      intronic chr5:64922542(+) A-I      intronic chr5:64944907(+) A-I      intronic chr5:64922806(+) A-I      intronic chr5:64922816(+) A-I      intronic chr5:64936927(+) A-I      intronic chr5:64954781(+) A-I      intronic chr5:64954782(+) A-I      intronic chr5:64924744(+) A-I      intronic chr5:64924666(+) A-I      intronic chr5:64924508(+) A-I      intronic chr5:64936961(+) A-I      intronic chr5:64938600(+) A-I      intronic chr5:64944841(+) A-I      intronic chr5:64944842(+) A-I      intronic chr5:64944844(+) A-I      intronic chr5:64944855(+) A-I      intronic chr5:64944866(+) A-I      intronic chr5:64944872(+) A-I      intronic chr5:64944878(+) A-I      intronic chr5:64944881(+) A-I      intronic chr5:64936846(+) A-I      intronic chr5:64954744(+) A-I      intronic chr5:64954664(+) A-I      intronic chr5:64952648(+) A-I      intronic chr5:64944909(+) A-I      intronic chr5:64944859(+) A-I      intronic chr5:64944818(+) A-I      intronic chr5:64940169(+) A-I      intronic chr5:64938592(+) A-I      intronic chr5:64938574(+) A-I      intronic chr5:64938075(+) A-I      intronic chr5:64923266(+) A-I      intronic chr5:64954688(+) A-I      intronic chr5:64937417(+) A-I      intronic chr5:64923401(+) A-I      intronic chr5:64934902(+) A-I      intronic chr5:64937489(+) A-I      intronic chr5:64924745(+) A-I      intronic chr5:64938591(+) A-I      intronic chr5:64952815(+) A-I      intronic chr5:64954615(+) A-I      intronic chr5:64924709(+) A-I      intronic chr5:64944968(+) A-I      intronic chr5:64924738(+) A-I      intronic chr5:64924440(+) A-I      intronic chr5:64939523(+) A-I      intronic chr5:64936996(+) A-I      intronic chr5:64952590(+) A-I      intronic chr5:64937022(+) A-I      intronic chr5:64924725(+) A-I      intronic chr5:64936791(+) A-I      intronic chr5:64936971(+) A-I      intronic chr5:64955718(+) A-I      intronic chr5:64935272(+) A-I      intronic chr5:64940133(+) A-I      intronic chr5:64940531(+) A-I      intronic chr5:64952571(+) A-I      intronic chr5:64937541(+) A-I      intronic chr5:64938522(+) A-I      intronic chr5:64954727(+) A-I      intronic chr5:64938588(+) A-I      intronic chr5:64923276(+) A-I      intronic chr5:64922807(+) A-I      intronic chr5:64922790(+) A-I      intronic chr5:64937459(+) A-I      intronic chr5:64935407(+) A-I      intronic chr5:64932174(+) A-I      intronic chr5:64960927(+) A-I      3'UTR chr5:64935408(+) A-I      intronic chr5:64932156(+) A-I      intronic chr5:64954686(+) A-I      intronic chr5:64934808(+) A-I      intronic chr5:64940104(+) A-I      intronic chr5:64932071(+) A-I      intronic chr5:64937447(+) A-I      intronic chr5:64936951(+) A-I      intronic chr5:64934750(+) A-I      intronic chr5:64922839(+) A-I      intronic chr5:64924306(+) A-I      intronic chr5:64938587(+) A-I      intronic chr5:64952580(+) A-I      intronic chr5:64944932(+) A-I      intronic chr5:64924428(+) A-I      intronic chr5:64940103(+) A-I      intronic chr5:64940762(+) A-I      intronic chr5:64933825(+) A-I      intronic chr5:64922848(+) A-I      intronic chr5:64955597(+) A-I      intronic chr5:64952953(+) A-I      intronic chr5:64922808(+) A-I      intronic chr5:64932100(+) A-I      intronic chr5:64944922(+) A-I      intronic chr5:64947163(+) A-I      intronic chr5:64932007(+) A-I      intronic chr5:64952612(+) A-I      intronic chr5:64924367(+) A-I      intronic chr5:64944809(+) A-I      intronic chr5:64922791(+) A-I      intronic chr5:64922820(+) A-I      intronic chr5:64924372(+) A-I      intronic chr5:64922416(+) A-I      intronic chr5:64922880(+) A-I      intronic chr5:64924425(+) A-I      intronic chr5:64937498(+) A-I      intronic chr5:64946211(+) A-I      intronic chr5:64933704(+) A-I      intronic chr5:64954749(+) A-I      intronic chr5:64944998(+) A-I      intronic chr5:64936991(+) A-I      intronic chr5:64933672(+) A-I      intronic chr5:64936819(+) A-I      intronic chr5:64937023(+) A-I      intronic chr5:64936830(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TRAPPC13	chr5:64920570-64920571(+) m6A 5'UTR       22608085 chr5:64920662-64920663(+) m6A 5'UTR       24284625//24981863//27773535//22608085 chr5:64920704-64920705(+) m6A 5'UTR       24284625//24981863//27773535//22608085 chr5:64920734-64920735(+) m6A 5'UTR       24284625//24981863//27773535//22608085 chr5:64920842-64920843(+) m6A 5'UTR//exon       24981863//22608085 chr5:64920907-64920908(+) m6A CDS//exon       24981863 chr5:64921871-64921872(+) m6A intron       24981863 chr5:64921902-64921903(+) m6A intron       24981863 chr5:64925324-64925325(+) m6A intron       24981863//22608085 chr5:64925499-64925500(+) m6A intron       24284625//24209618//24981863//22608085 chr5:64925517-64925518(+) Y intron       26075521 chr5:64925569-64925570(+) m6A intron       24284625//24209618//24981863//22608085 chr5:64925620-64925621(+) m6A intron       24284625//24209618//24981863//27773535//22608085 chr5:64925641-64925642(+) m6A intron       24284625//24209618//24981863//27773535//22608085 chr5:64925743-64925744(+) m6A intron       24284625//24209618//24981863//27773535//22575960//22608085 chr5:64925770-64925771(+) m6A intron       24284625//24209618//24981863//27773535//22575960//22608085 chr5:64925788-64925789(+) m6A intron       24284625//24209618//24981863//27773535//22575960//22608085 chr5:64925921-64925922(+) m6A intron       24284625//24209618//24981863//27773535//22575960//22608085 chr5:64925929-64925930(+) m6A intron       24284625//24209618//24981863//27773535//22575960//22608085 chr5:64925951-64925952(+) m6A intron       24284625//24209618//24981863//22575960//22608085 chr5:64925961-64925962(+) m6A intron       24284625//24209618//24981863//22575960//22608085 chr5:64925969-64925970(+) m6A intron       24284625//24209618//24981863//22575960//22608085 chr5:64925974-64925975(+) m6A intron       24209618//24981863//22608085 chr5:64926001-64926002(+) m6A intron       24209618//24981863//22608085 chr5:64960938-64960939(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TRAPPC13	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-101-2-5p
Interactor2: TRAPPC13

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.