Basic Information:

  VIRBase ID:  

HHID00076068

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:  MIMAT0037312          CPED1:  NM_001105533     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-101-2-5p	CPED1
miRBase Accession/Entrez ID	MIMAT0037312	79974
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	C7orf58

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-101-2-5p	rs1189997653 chr9:4850323    C/G rs1411860402 chr9:4850328    G/C rs1472339708 chr9:4850325    G/A rs374692878 chr9:4850308    T/C rs752365347 chr9:4850320    G/C rs758036961 chr9:4850324    C/T rs777507775 chr9:4850326    A/G rs570832031 chr9:4850310    G/A rs570832031 chr9:4850310    G/T rs766953168 chr9:4850309    C/T rs779213487 chr9:4850315    T/C rs894878476 chr9:4850314    A/G

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CPED1	chr7:120790338(+) A-I      intronic chr7:120784393(+) A-I      intronic chr7:120784368(+) A-I      intronic chr7:120727916(+) A-I      intronic chr7:120727925(+) A-I      intronic chr7:120727938(+) A-I      intronic chr7:120650450(+) A-I      intronic chr7:120727896(+) A-I      intronic chr7:120727957(+) A-I      intronic chr7:120727966(+) A-I      intronic chr7:120727976(+) A-I      intronic chr7:120790387(+) A-I      intronic chr7:120728489(+) A-I      intronic chr7:120728511(+) A-I      intronic chr7:120728530(+) A-I      intronic chr7:120873500(+) A-I      intronic chr7:120649479(+) A-I      intronic chr7:120854512(+) A-I      intronic chr7:120777479(+) A-I      intronic chr7:120739539(+) A-I      intronic chr7:120728619(+) A-I      intronic chr7:120728622(+) A-I      intronic chr7:120654549(+) A-I      intronic chr7:120718547(+) A-I      intronic chr7:120727815(+) A-I      intronic chr7:120727818(+) A-I      intronic chr7:120727831(+) A-I      intronic chr7:120727889(+) A-I      intronic chr7:120796492(+) A-I      intronic chr7:120796516(+) A-I      intronic chr7:120796517(+) A-I      intronic chr7:120796518(+) A-I      intronic chr7:120796520(+) A-I      intronic chr7:120796521(+) A-I      intronic chr7:120796522(+) A-I      intronic chr7:120796525(+) A-I      intronic chr7:120796533(+) A-I      intronic chr7:120796539(+) A-I      intronic chr7:120796540(+) A-I      intronic chr7:120796562(+) A-I      intronic chr7:120796565(+) A-I      intronic chr7:120739583(+) A-I      intronic chr7:120910150(+) A-I      intronic chr7:120861140(+) A-I      intronic chr7:120861047(+) A-I      intronic chr7:120861046(+) A-I      intronic chr7:120796469(+) A-I      intronic chr7:120796467(+) A-I      intronic chr7:120796317(+) A-I      intronic chr7:120790625(+) A-I      intronic chr7:120790477(+) A-I      intronic chr7:120650422(+) A-I      intronic chr7:120796561(+) A-I      intronic chr7:120790339(+) A-I      intronic chr7:120727899(+) A-I      intronic chr7:120727994(+) A-I      intronic chr7:120839627(+) A-I      intronic chr7:120728503(+) A-I      intronic chr7:120841363(+) A-I      intronic chr7:120727937(+) A-I      intronic chr7:120913420(+) A-I      intronic chr7:120728566(+) A-I      intronic chr7:120839584(+) A-I      intronic chr7:120728624(+) A-I      intronic chr7:120728625(+) A-I      intronic chr7:120728593(+) A-I      intronic chr7:120727998(+) A-I      intronic chr7:120649616(+) A-I      intronic chr7:120841330(+) A-I      intronic chr7:120727853(+) A-I      intronic chr7:120730807(+) A-I      intronic chr7:120839610(+) A-I      intronic chr7:120728592(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CPED1	chr7:120628931-120628932(+) m6A 5'UTR       24981863 chr7:120628961-120628962(+) m6A 5'UTR       24981863 chr7:120629107-120629108(+) m6A 5'UTR//intron       24981863 chr7:120629145-120629146(+) m6A 5'UTR//intron       24981863 chr7:120629156-120629157(+) m6A 5'UTR//intron       24981863 chr7:120629175-120629176(+) m6A 5'UTR//intron       24981863 chr7:120629496-120629497(+) m6A 5'UTR//exon       24981863 chr7:120629505-120629506(+) m6A 5'UTR//exon       24981863 chr7:120629560-120629561(+) m6A 5'UTR//exon       24981863 chr7:120629587-120629588(+) m6A 5'UTR//exon       24981863 chr7:120629647-120629648(+) m6A 5'UTR//exon       24209618//24981863 chr7:120629668-120629669(+) m6A 5'UTR//exon       24209618//24981863//22575960 chr7:120629768-120629769(+) m6A CDS//exon       22575960 chr7:120935588-120935589(+) m6A CDS       24209618//24981863 chr7:120935697-120935698(+) m6A CDS       24209618//24981863 chr7:120935757-120935758(+) m6A 3'UTR       24209618//24981863 chr7:120936027-120936028(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CPED1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-101-2-5p
Interactor2: CPED1

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.