Detail Information

Basic Information:


  VIRBase ID:  

HHID00076065

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:           DSCC1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-101-2-5p DSCC1
miRBase
Accession/Entrez ID		 MIMAT0037312 79075
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - DCC1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-101-2-5p
rs1189997653 chr9:4850323    C/G
rs1411860402 chr9:4850328    G/C
rs1472339708 chr9:4850325    G/A
rs374692878 chr9:4850308    T/C
rs752365347 chr9:4850320    G/C
rs758036961 chr9:4850324    C/T
rs777507775 chr9:4850326    A/G
rs570832031 chr9:4850310    G/A
rs570832031 chr9:4850310    G/T
rs766953168 chr9:4850309    C/T
rs779213487 chr9:4850315    T/C
rs894878476 chr9:4850314    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DSCC1
chr8:120857441(-) A-I      intronic
chr8:120856832(-) A-I      intronic
chr8:120861600(-) A-I      intronic
chr8:120858514(-) A-I      intronic
chr8:120861608(-) A-I      intronic
chr8:120856663(-) A-I      intronic
chr8:120856173(-) A-I      intronic
chr8:120856632(-) A-I      intronic
chr8:120856486(-) A-I      intronic
chr8:120853482(-) A-I      intronic
chr8:120853459(-) A-I      intronic
chr8:120858486(-) A-I      intronic
chr8:120853451(-) A-I      intronic
chr8:120853070(-) A-I      intronic
chr8:120853024(-) A-I      intronic
chr8:120858088(-) A-I      intronic
chr8:120852907(-) A-I      intronic
chr8:120861584(-) A-I      intronic
chr8:120861524(-) A-I      intronic
chr8:120856210(-) A-I      intronic
chr8:120858482(-) A-I      intronic
chr8:120858465(-) A-I      intronic
chr8:120856220(-) A-I      intronic
chr8:120858006(-) A-I      intronic
chr8:120857997(-) A-I      intronic
chr8:120858492(-) A-I      intronic
chr8:120858067(-) A-I      intronic
chr8:120858106(-) A-I      intronic
chr8:120858533(-) A-I      intronic
chr8:120856230(-) A-I      intronic
chr8:120858547(-) A-I      intronic
chr8:120858837(-) A-I      intronic
chr8:120861174(-) A-I      intronic
chr8:120861180(-) A-I      intronic
chr8:120861534(-) A-I      intronic
chr8:120856221(-) A-I      intronic
chr8:120852986(-) A-I      intronic
chr8:120858931(-) A-I      intronic
chr8:120861467(-) A-I      intronic
chr8:120856155(-) A-I      intronic
chr8:120856196(-) A-I      intronic
chr8:120853518(-) A-I      intronic
chr8:120857454(-) A-I      intronic
chr8:120860044(-) A-I      intronic
chr8:120860030(-) A-I      intronic
chr8:120859071(-) A-I      intronic
chr8:120857464(-) A-I      intronic
chr8:120856633(-) A-I      intronic
chr8:120858478(-) A-I      intronic
chr8:120858389(-) A-I      intronic
chr8:120857466(-) A-I      intronic
chr8:120853399(-) A-I      intronic
chr8:120856168(-) A-I      intronic
chr8:120858163(-) A-I      intronic
chr8:120856433(-) A-I      intronic
chr8:120860014(-) A-I      intronic
chr8:120856113(-) A-I      intronic
chr8:120851181(-) A-I      intronic
chr8:120851192(-) A-I      intronic
chr8:120856079(-) A-I      intronic
chr8:120859054(-) A-I      intronic
chr8:120853337(-) A-I      intronic
chr8:120856917(-) A-I      intronic
chr8:120857598(-) A-I      intronic
chr8:120858993(-) A-I      intronic
chr8:120860082(-) A-I      intronic
chr8:120860449(-) A-I      intronic
chr8:120858967(-) A-I      intronic
chr8:120856289(-) A-I      intronic
chr8:120853030(-) A-I      intronic
chr8:120856547(-) A-I      intronic
chr8:120856290(-) A-I      intronic
chr8:120860382(-) A-I      intronic
chr8:120856596(-) A-I      intronic
chr8:120861481(-) A-I      intronic
chr8:120851193(-) A-I      intronic
chr8:120851138(-) A-I      intronic
chr8:120853328(-) A-I      intronic
chr8:120856555(-) A-I      intronic
chr8:120851229(-) A-I      intronic
chr8:120853138(-) A-I      intronic
chr8:120860066(-) A-I      intronic
chr8:120856456(-) A-I      intronic
chr8:120858041(-) A-I      intronic
chr8:120857944(-) A-I      intronic
chr8:120852948(-) A-I      intronic
chr8:120856181(-) A-I      intronic
chr8:120856236(-) A-I      intronic
chr8:120853425(-) A-I      intronic
chr8:120852922(-) A-I      intronic
chr8:120856592(-) A-I      intronic
chr8:120852935(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DSCC1
chr8:120851098(-) A-I intron -    15342557
chr8:120851138(-) A-I intron -    15342557
chr8:120851141(-) A-I intron -    15342557
chr8:120851181(-) A-I intron -    15342557
chr8:120851192(-) A-I intron -    15342557
chr8:120851193(-) A-I intron -    15342557
chr8:120851201(-) A-I intron -    15342557
chr8:120852922(-) A-G intron -    22484847
chr8:120852935(-) A-G intron -    22484847
chr8:120852947(-) A-G intron -    22484847
chr8:120852948(-) A-G intron -    22484847
chr8:120853004(-) A-G intron -    22484847
chr8:120853030(-) A-G intron -    22484847
chr8:120853040(-) A-G intron -    22484847
chr8:120853138(-) A-G intron -    22484847
chr8:120853518(-) A-G intron -    22484847
chr8:120856168(-) A-G intron -    22484847
chr8:120856181(-) A-G intron -    22484847
chr8:120856547(-) A-G intron -    22484847
chr8:120856555(-) A-G intron -    22484847
chr8:120856596(-) A-G intron -    22484847
chr8:120856597(-) A-G intron -    22484847
chr8:120856619(-) A-G intron -    22484847
chr8:120857464(-) A-G intron -    22484847
chr8:120857598(-) A-G intron -    22484847
chr8:120857945(-) A-G intron -    22484847
chr8:120861481(-) A-G intron -    22484847
chr8:120861511(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DSCC1
chr8:120847107-120847108(-) m6A 3'UTR       24981863
chr8:120865324-120865325(-) Am CDS//exon       -
chr8:120867858-120867859(-) m6A CDS//exon       27773536
chr8:120868025-120868026(-) m6A CDS//exon       27773536
chr8:120868047-120868048(-) m6A 5'UTR//exon       24981863//27773536
chr8:120868055-120868056(-) m6A 5'UTR//exon       24981863//27773536
chr8:120868101-120868102(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate DSCC1
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-101-2-5p
Interactor2: DSCC1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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