Basic Information:

  VIRBase ID:  

HHID00076060

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:  MIMAT0037312          KIAA1586:  NM_001286275     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-101-2-5p	KIAA1586
miRBase Accession/Entrez ID	MIMAT0037312	57691
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-101-2-5p	rs1189997653 chr9:4850323    C/G rs1411860402 chr9:4850328    G/C rs1472339708 chr9:4850325    G/A rs374692878 chr9:4850308    T/C rs752365347 chr9:4850320    G/C rs758036961 chr9:4850324    C/T rs777507775 chr9:4850326    A/G rs570832031 chr9:4850310    G/A rs570832031 chr9:4850310    G/T rs766953168 chr9:4850309    C/T rs779213487 chr9:4850315    T/C rs894878476 chr9:4850314    A/G

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	KIAA1586	chr6:56918807(+) A-I      NonSyn:Met->Val chr6:56915233(+) A-I      intronic chr6:56915336(+) A-I      intronic chr6:56915818(+) A-I      intronic chr6:56915348(+) A-I      intronic chr6:56915242(+) A-I      intronic chr6:56915255(+) A-I      intronic chr6:56915382(+) A-I      intronic chr6:56915832(+) A-I      intronic chr6:56915915(+) A-I      intronic chr6:56915245(+) A-I      intronic chr6:56915180(+) A-I      intronic chr6:56915190(+) A-I      intronic chr6:56915349(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	KIAA1586	chr6:56919183(+) A-C intron -    21725310 chr6:56915242(+) A-G intron -    22484847 chr6:56915255(+) A-G intron -    22484847 chr6:56915382(+) A-G intron -    22484847 chr6:56915915(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	KIAA1586	chr6:56917552-56917553(+) m6A CDS//exon       22608085 chr6:56917611-56917612(+) m6A CDS//exon       24981863//27773535//22608085 chr6:56917632-56917633(+) m6A CDS//exon       24981863//27773535//22608085 chr6:56917716-56917717(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr6:56917737-56917738(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr6:56917885-56917886(+) m6A CDS       24284625//24981863//27773535//22575960//22608085 chr6:56917923-56917924(+) m6A CDS       24284625//24981863//22608085 chr6:56918007-56918008(+) m6A CDS       22608085 chr6:56918070-56918071(+) m6A CDS       24981863//27773535//22608085 chr6:56918079-56918080(+) m6A CDS       24981863//27773535//22608085 chr6:56918175-56918176(+) m6A CDS       27773535//22608085 chr6:56918546-56918547(+) m6A CDS       24981863//22608085 chr6:56918601-56918602(+) m6A CDS       24981863//22608085 chr6:56918671-56918672(+) m6A CDS       24981863//22608085 chr6:56918686-56918687(+) m6A CDS       24981863//22608085 chr6:56918700-56918701(+) m6A CDS       24981863//22608085 chr6:56918707-56918708(+) m6A CDS       24981863//22608085 chr6:56918739-56918740(+) m6A CDS       24981863//22608085 chr6:56918870-56918871(+) m6A CDS       22608085 chr6:56919080-56919081(+) m6A CDS       24981863//22608085 chr6:56919119-56919120(+) m6A CDS       24981863//22608085 chr6:56919140-56919141(+) m6A CDS       24981863//22608085 chr6:56919164-56919165(+) m6A CDS       24981863//22608085 chr6:56919201-56919202(+) m6A CDS       24981863//22608085 chr6:56919256-56919257(+) m6A CDS       22608085 chr6:56919341-56919342(+) m6A CDS       22608085 chr6:56919440-56919441(+) m6A CDS       22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	KIAA1586	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-101-2-5p
Interactor2: KIAA1586

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.