Basic Information:

  VIRBase ID:  

HHID00076056

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:  MIMAT0037312          TMEM9B:  NM_001286095     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-101-2-5p	TMEM9B
miRBase Accession/Entrez ID	MIMAT0037312	56674
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	C11orf15

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-101-2-5p	rs1189997653 chr9:4850323    C/G rs1411860402 chr9:4850328    G/C rs1472339708 chr9:4850325    G/A rs374692878 chr9:4850308    T/C rs752365347 chr9:4850320    G/C rs758036961 chr9:4850324    C/T rs777507775 chr9:4850326    A/G rs570832031 chr9:4850310    G/A rs570832031 chr9:4850310    G/T rs766953168 chr9:4850309    C/T rs779213487 chr9:4850315    T/C rs894878476 chr9:4850314    A/G

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	TMEM9B	chr11:8980204(-) A-I      intronic chr11:8980180(-) A-I      intronic chr11:8980188(-) A-I      intronic chr11:8978404(-) A-I      intronic chr11:8973588(-) A-I      intronic chr11:8980230(-) A-I      intronic chr11:8974082(-) A-I      intronic chr11:8973593(-) A-I      intronic chr11:8978359(-) A-I      intronic chr11:8973642(-) A-I      intronic chr11:8974089(-) A-I      intronic chr11:8974050(-) A-I      intronic chr11:8980182(-) A-I      intronic chr11:8979897(-) A-I      intronic chr11:8979756(-) A-I      intronic chr11:8979538(-) A-I      intronic chr11:8981766(-) A-I      intronic chr11:8974177(-) A-I      intronic chr11:8973548(-) A-I      intronic chr11:8980314(-) A-I      intronic chr11:8980224(-) A-I      intronic chr11:8973574(-) A-I      intronic chr11:8973579(-) A-I      intronic chr11:8974122(-) A-I      intronic chr11:8980885(-) A-I      intronic chr11:8973596(-) A-I      intronic chr11:8978546(-) A-I      intronic chr11:8974090(-) A-I      intronic chr11:8974237(-) A-I      intronic chr11:8978517(-) A-I      intronic chr11:8973490(-) A-I      intronic chr11:8971464(-) A-I      intronic chr11:8980391(-) A-I      intronic chr11:8981826(-) A-I      intronic chr11:8980747(-) A-I      intronic chr11:8971538(-) A-I      intronic chr11:8974060(-) A-I      intronic chr11:8974066(-) A-I      intronic chr11:8980774(-) A-I      intronic chr11:8979927(-) A-I      intronic chr11:8979926(-) A-I      intronic chr11:8974161(-) A-I      intronic chr11:8979816(-) A-I      intronic chr11:8974022(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	TMEM9B	chr11:8968956-8968957(-) m6A 3'UTR       22608085 chr11:8969053-8969054(-) m6A 3'UTR       24284625//24981863//22608085 chr11:8969082-8969083(-) m6A 3'UTR       24284625//24981863//22608085 chr11:8969088-8969089(-) m6A 3'UTR       24284625//24981863//22608085 chr11:8969101-8969102(-) m6A 3'UTR       24284625//24981863//22608085 chr11:8969150-8969151(-) m6A 3'UTR       24284625//24981863//22608085 chr11:8969155-8969156(-) m6A 3'UTR       24284625//24981863//22608085 chr11:8969187-8969188(-) m6A 3'UTR       24284625//24981863//22608085 chr11:8969403-8969404(-) m6A 3'UTR       24284625//24981863 chr11:8969576-8969577(-) m6A 3'UTR       27773535 chr11:8969653-8969654(-) Y 3'UTR       26075521 chr11:8969688-8969689(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085 chr11:8969728-8969729(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085 chr11:8969741-8969742(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085 chr11:8969812-8969813(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085 chr11:8969825-8969826(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085 chr11:8969833-8969834(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085 chr11:8969954-8969955(-) m6A CDS       24284625//24209618//22608085 chr11:8985877-8985878(-) m6A 5'UTR//intron       24981863//27371828//27773536 chr11:8986083-8986084(-) m6A 5'UTR//intron       24981863 chr11:8986234-8986235(-) m6A 5'UTR//intron       24981863 chr11:8986545-8986546(-) m6A 5'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	TMEM9B	Exosome Blood     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-101-2-5p
Interactor2: TMEM9B

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.