Detail Information

Basic Information:


  VIRBase ID:  

HHID00076047

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:           MRGBP:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-101-2-5p MRGBP
miRBase
Accession/Entrez ID		 MIMAT0037312 55257
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C20orf20//Eaf7//MRG15BP//URCC4

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-101-2-5p
rs1189997653 chr9:4850323    C/G
rs1411860402 chr9:4850328    G/C
rs1472339708 chr9:4850325    G/A
rs374692878 chr9:4850308    T/C
rs752365347 chr9:4850320    G/C
rs758036961 chr9:4850324    C/T
rs777507775 chr9:4850326    A/G
rs570832031 chr9:4850310    G/A
rs570832031 chr9:4850310    G/T
rs766953168 chr9:4850309    C/T
rs779213487 chr9:4850315    T/C
rs894878476 chr9:4850314    A/G

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase MRGBP
chr20:61427956-61427957(+) m6A CDS       24284625//24209618
chr20:61428467-61428468(+) m6A CDS       24284625//24209618
chr20:61428497-61428498(+) m6A CDS       24209618
chr20:61428548-61428549(+) m6A CDS       -
chr20:61429978-61429979(+) m6A CDS       -
chr20:61430377-61430378(+) m6A CDS       25456834//24981863//27773535
chr20:61430858-61430859(+) m6A CDS       24284625//24209618//25456834//24981863//27773535
chr20:61430870-61430871(+) m6A CDS       24284625//24209618//25456834//24981863//27773535
chr20:61430879-61430880(+) m6A CDS       24284625//24209618//25456834
chr20:61430903-61430904(+) m6A CDS       24284625//24209618//25456834
chr20:61430948-61430949(+) m6A CDS       24284625//24209618
chr20:61430995-61430996(+) m6A 3'UTR       24284625//24209618
chr20:61431179-61431180(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr20:61431189-61431190(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr20:61431199-61431200(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr20:61431208-61431209(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr20:61431371-61431372(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr20:61431395-61431396(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr20:61431569-61431570(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr20:61431576-61431577(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr20:61431682-61431683(+) m6A 3'UTR       24209618
chr20:61431703-61431704(+) m6A 3'UTR       24209618
chr20:61431921-61431922(+) m6A 3'UTR       24981863
chr20:61432599-61432600(+) m6A 3'UTR       -
chr20:61432630-61432631(+) m6A 3'UTR       -
chr20:61432699-61432700(+) m6A 3'UTR       -
chr20:61432707-61432708(+) m6A 3'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate MRGBP
Cytosol K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-101-2-5p
Interactor2: MRGBP

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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