Detail Information

Basic Information:


  VIRBase ID:  

HHID00076027

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-101-2-5p:           PIP5K1C:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-101-2-5p PIP5K1C
miRBase
Accession/Entrez ID		 MIMAT0037312 23396
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - LCCS3//PIP5K-GAMMA//PIP5K1-gamma//PIP5Kgamma

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-101-2-5p
rs1189997653 chr9:4850323    C/G
rs1411860402 chr9:4850328    G/C
rs1472339708 chr9:4850325    G/A
rs374692878 chr9:4850308    T/C
rs752365347 chr9:4850320    G/C
rs758036961 chr9:4850324    C/T
rs777507775 chr9:4850326    A/G
rs570832031 chr9:4850310    G/A
rs570832031 chr9:4850310    G/T
rs766953168 chr9:4850309    C/T
rs779213487 chr9:4850315    T/C
rs894878476 chr9:4850314    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PIP5K1C
chr19:3682209(-) A-I      intronic
chr19:3682206(-) A-I      intronic
chr19:3648217(-) A-I      intronic
chr19:3648190(-) A-I      intronic
chr19:3682192(-) A-I      intronic
chr19:3682180(-) A-I      intronic
chr19:3648224(-) A-I      intronic
chr19:3648185(-) A-I      intronic
chr19:3648198(-) A-I      intronic
chr19:3648216(-) A-I      intronic
chr19:3686633(-) A-I      intronic
chr19:3677363(-) A-I      intronic
chr19:3685984(-) A-I      intronic
chr19:3686026(-) A-I      intronic
chr19:3686088(-) A-I      intronic
chr19:3686616(-) A-I      intronic
chr19:3689386(-) A-I      intronic
chr19:3689406(-) A-I      intronic
chr19:3640342(-) A-I      intronic
chr19:3640431(-) A-I      intronic
chr19:3640770(-) A-I      intronic
chr19:3640781(-) A-I      intronic
chr19:3640891(-) A-I      intronic
chr19:3641018(-) A-I      intronic
chr19:3641137(-) A-I      intronic
chr19:3641156(-) A-I      intronic
chr19:3647728(-) A-I      intronic
chr19:3647753(-) A-I      intronic
chr19:3647912(-) A-I      intronic
chr19:3648134(-) A-I      intronic
chr19:3648309(-) A-I      intronic
chr19:3651129(-) A-I      intronic
chr19:3682320(-) A-I      intronic
chr19:3682338(-) A-I      intronic
chr19:3674694(-) A-I      intronic
chr19:3689525(-) A-I      intronic
chr19:3695850(-) A-I      intronic
chr19:3695854(-) A-I      intronic
chr19:3695875(-) A-I      intronic
chr19:3695758(-) A-I      intronic
chr19:3674790(-) A-I      intronic
chr19:3647762(-) A-I      intronic
chr19:3647833(-) A-I      intronic
chr19:3682137(-) A-I      intronic
chr19:3681399(-) A-I      intronic
chr19:3689455(-) A-I      intronic
chr19:3677534(-) A-I      intronic
chr19:3677518(-) A-I      intronic
chr19:3677498(-) A-I      intronic
chr19:3677469(-) A-I      intronic
chr19:3680418(-) A-I      intronic
chr19:3681398(-) A-I      intronic
chr19:3689093(-) A-I      intronic
chr19:3677069(-) A-I      intronic
chr19:3680496(-) A-I      intronic
chr19:3648036(-) A-I      intronic
chr19:3640829(-) A-I      intronic
chr19:3648293(-) A-I      intronic
chr19:3640790(-) A-I      intronic
chr19:3648299(-) A-I      intronic
chr19:3662684(-) A-I      intronic
chr19:3640508(-) A-I      intronic
chr19:3677433(-) A-I      intronic
chr19:3640852(-) A-I      intronic
chr19:3663647(-) A-I      intronic
chr19:3647688(-) A-I      intronic
chr19:3648248(-) A-I      intronic
chr19:3676880(-) A-I      intronic
chr19:3647823(-) A-I      intronic
chr19:3648220(-) A-I      intronic
chr19:3641131(-) A-I      intronic
chr19:3693826(-) A-I      intronic
chr19:3681357(-) A-I      intronic
chr19:3677048(-) A-I      intronic
chr19:3654097(-) A-I      intronic
chr19:3693954(-) A-I      intronic
chr19:3689077(-) A-I      intronic
chr19:3681403(-) A-I      intronic
chr19:3677017(-) A-I      intronic
chr19:3690429(-) A-I      intronic
chr19:3695931(-) A-I      intronic
chr19:3674696(-) A-I      intronic
chr19:3686220(-) A-I      intronic
chr19:3680440(-) A-I      intronic
chr19:3663601(-) A-I      intronic
chr19:3686020(-) A-I      intronic
chr19:3695975(-) A-I      intronic
chr19:3647845(-) A-I      intronic
chr19:3687028(-) A-I      intronic
chr19:3640796(-) A-I      intronic
chr19:3690437(-) A-I      intronic
chr19:3680467(-) A-I      intronic
chr19:3677577(-) A-I      intronic
chr19:3641101(-) A-I      intronic
chr19:3695942(-) A-I      intronic
chr19:3687277(-) A-I      intronic
chr19:3663131(-) A-I      intronic
chr19:3640849(-) A-I      intronic
chr19:3674727(-) A-I      intronic
chr19:3640853(-) A-I      intronic
chr19:3648292(-) A-I      intronic
chr19:3687079(-) A-I      intronic
chr19:3641085(-) A-I      intronic
chr19:3676863(-) A-I      intronic
chr19:3663091(-) A-I      intronic
chr19:3682460(-) A-I      intronic
chr19:3696020(-) A-I      intronic
chr19:3687128(-) A-I      intronic
chr19:3693966(-) A-I      intronic
chr19:3687011(-) A-I      intronic
chr19:3677336(-) A-I      intronic
chr19:3676952(-) A-I      intronic
chr19:3682625(-) A-I      intronic
chr19:3695860(-) A-I      intronic
chr19:3639527(-) A-I      intronic
chr19:3685998(-) A-I      intronic
chr19:3681457(-) A-I      intronic
chr19:3648155(-) A-I      intronic
chr19:3685952(-) A-I      intronic
chr19:3640813(-) A-I      intronic
chr19:3641091(-) A-I      intronic
chr19:3648151(-) A-I      intronic
chr19:3686124(-) A-I      intronic
chr19:3681367(-) A-I      intronic
chr19:3641046(-) A-I      intronic
chr19:3677000(-) A-I      intronic
chr19:3682435(-) A-I      intronic
chr19:3680490(-) A-I      intronic
chr19:3695882(-) A-I      intronic
chr19:3681462(-) A-I      intronic
chr19:3694021(-) A-I      intronic
chr19:3687274(-) A-I      intronic
chr19:3680457(-) A-I      intronic
chr19:3687265(-) A-I      intronic
chr19:3647937(-) A-I      intronic
chr19:3674659(-) A-I      intronic
chr19:3681261(-) A-I      intronic
chr19:3677032(-) A-I      intronic
chr19:3682224(-) A-I      intronic
chr19:3689404(-) A-I      intronic
chr19:3680371(-) A-I      intronic
chr19:3689161(-) A-I      intronic
chr19:3686016(-) A-I      intronic
chr19:3681361(-) A-I      intronic
chr19:3647882(-) A-I      intronic
chr19:3648161(-) A-I      intronic
chr19:3682260(-) A-I      intronic
chr19:3681366(-) A-I      intronic
chr19:3686500(-) A-I      intronic
chr19:3641042(-) A-I      intronic
chr19:3674689(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PIP5K1C
chr19:3648325(-) A-I intron -    22327324
chr19:3648293(-) A-G intron -    22484847
chr19:3648299(-) A-G intron -    22484847
chr19:3674727(-) A-G intron -    22484847
chr19:3676880(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PIP5K1C
chr19:3630269-3630270(-) m6A 3'UTR       24284625//27773535
chr19:3630294-3630295(-) m6A 3'UTR       24284625//27773535
chr19:3630319-3630320(-) m6A 3'UTR       24284625//27773535
chr19:3630425-3630426(-) m6A 3'UTR       24284625//27773535
chr19:3630432-3630433(-) m6A 3'UTR       24284625//27773535
chr19:3630442-3630443(-) m6A 3'UTR       24284625//27773535
chr19:3630454-3630455(-) m6A 3'UTR       24284625//27773535
chr19:3630618-3630619(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535
chr19:3630685-3630686(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:3630700-3630701(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:3630722-3630723(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:3630857-3630858(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr19:3630897-3630898(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr19:3630919-3630920(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:3630977-3630978(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:3630984-3630985(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:3631085-3631086(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr19:3631129-3631130(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085
chr19:3631323-3631324(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3631342-3631343(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3631399-3631400(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3631541-3631542(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22608085
chr19:3631576-3631577(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27371828//27773536//22608085
chr19:3631639-3631640(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27371828//27773536//22575960
chr19:3631665-3631666(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27371828//27773536//22575960
chr19:3631800-3631801(-) m6A 3'UTR       24284625//24981863//22575960
chr19:3631840-3631841(-) m6A 3'UTR       24284625//24981863//27371828//22575960
chr19:3631954-3631955(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3632049-3632050(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:3632060-3632061(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:3632112-3632113(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:3632180-3632181(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:3632227-3632228(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3632274-3632275(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3632308-3632309(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3632390-3632391(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3632464-3632465(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3632486-3632487(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3632584-3632585(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3632599-3632600(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3632612-3632613(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3632654-3632655(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3632738-3632739(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:3632848-3632849(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:3632854-3632855(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:3632863-3632864(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:3632947-3632948(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr19:3633044-3633045(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773536
chr19:3636676-3636677(-) m6A 3'UTR//intron       24284625
chr19:3636732-3636733(-) m6A 3'UTR//intron       24284625
chr19:3636777-3636778(-) m6A 3'UTR//intron       24284625//25456834
chr19:3636803-3636804(-) m6A 3'UTR//intron       24284625//25456834
chr19:3636839-3636840(-) m6A 3'UTR//intron       24284625//25456834
chr19:3642915-3642916(-) m6A CDS       24284625//27371828//27773536
chr19:3644193-3644194(-) m6A CDS//exon       24284625
chr19:3652003-3652004(-) m6A CDS//exon       25456834//24981863//27371828//27773536//22575960
chr19:3653294-3653295(-) m6A CDS//exon       25456834//24981863//27371828//27773536//22575960
chr19:3653360-3653361(-) m6A CDS//exon       24284625//22575960
chr19:3653372-3653373(-) m6A CDS//exon       24284625//22575960
chr19:3653378-3653379(-) m6A CDS//exon       24284625//22575960
chr19:3653492-3653493(-) m6A CDS//exon       24284625
chr19:3653513-3653514(-) m6A CDS//exon       24284625
chr19:3656458-3656459(-) m6A CDS//exon       24284625
chr19:3661028-3661029(-) m6A CDS//exon       24284625//27371828
chr19:3661042-3661043(-) m6A CDS//exon       24284625//27371828
chr19:3661901-3661902(-) m6A CDS//exon       24284625//27371828//27773536
chr19:3664833-3664834(-) m6A CDS//exon       24209618//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PIP5K1C
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-101-2-5p
Interactor2: PIP5K1C

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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