Basic Information:

  VIRBase ID:  

HHID00075902

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-196a-1-3p:  MIMAT0037307          MARCHF7:  NR_164791     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-196a-1-3p	MARCHF7
miRBase Accession/Entrez ID	MIMAT0037307	64844
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	AXO//AXOT//MARCH-VII//MARCH7//RNF177

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-196a-1-3p	rs1312793718 chr17:48632506    A/G rs1408763134 chr17:48632499    G/A rs186449583 chr17:48632497    G/A rs751860800 chr17:48632495    TC/T rs373603936 chr17:48632514    T/C rs374872332 chr17:48632510    T/C rs556956624 chr17:48632513    T/C rs759524926 chr17:48632507    ATGT/A

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	MARCHF7	chr2:160582891(+) A-I      intronic chr2:160589813(+) A-I      intronic chr2:160582915(+) A-I      intronic chr2:160582949(+) A-I      intronic chr2:160589323(+) A-I      intronic chr2:160576617(+) A-I      intronic chr2:160589812(+) A-I      intronic chr2:160572092(+) A-I      intronic chr2:160572048(+) A-I      intronic chr2:160591418(+) A-I      intronic chr2:160575676(+) A-I      intronic chr2:160575615(+) A-I      intronic chr2:160583952(+) A-I      intronic chr2:160573057(+) A-I      intronic chr2:160573022(+) A-I      intronic chr2:160572977(+) A-I      intronic chr2:160572104(+) A-I      intronic chr2:160572032(+) A-I      intronic chr2:160571348(+) A-I      intronic chr2:160571316(+) A-I      intronic chr2:160571211(+) A-I      intronic chr2:160571197(+) A-I      intronic chr2:160613105(+) A-I      intronic chr2:160613014(+) A-I      intronic chr2:160591413(+) A-I      intronic chr2:160587475(+) A-I      intronic chr2:160583887(+) A-I      intronic chr2:160582939(+) A-I      intronic chr2:160582913(+) A-I      intronic chr2:160576815(+) A-I      intronic chr2:160589290(+) A-I      intronic chr2:160589305(+) A-I      intronic chr2:160589319(+) A-I      intronic chr2:160589782(+) A-I      intronic chr2:160589810(+) A-I      intronic chr2:160589252(+) A-I      intronic chr2:160589866(+) A-I      intronic chr2:160589939(+) A-I      intronic chr2:160587500(+) A-I      intronic chr2:160591382(+) A-I      intronic chr2:160587518(+) A-I      intronic chr2:160588016(+) A-I      intronic chr2:160613012(+) A-I      intronic chr2:160588108(+) A-I      intronic chr2:160588118(+) A-I      intronic chr2:160613002(+) A-I      intronic chr2:160612997(+) A-I      intronic chr2:160612983(+) A-I      intronic chr2:160589124(+) A-I      intronic chr2:160600628(+) A-I      intronic chr2:160600518(+) A-I      intronic chr2:160592590(+) A-I      intronic chr2:160599189(+) A-I      intronic chr2:160599344(+) A-I      intronic chr2:160599369(+) A-I      intronic chr2:160599387(+) A-I      intronic chr2:160599389(+) A-I      intronic chr2:160591395(+) A-I      intronic chr2:160599397(+) A-I      intronic chr2:160571228(+) A-I      intronic chr2:160600201(+) A-I      intronic chr2:160600182(+) A-I      intronic chr2:160583949(+) A-I      intronic chr2:160613554(+) A-I      intronic chr2:160606687(+) A-I      intronic chr2:160592517(+) A-I      intronic chr2:160589951(+) A-I      intronic chr2:160571987(+) A-I      intronic chr2:160573045(+) A-I      intronic chr2:160586600(+) A-I      intronic chr2:160572030(+) A-I      intronic chr2:160583978(+) A-I      intronic chr2:160588144(+) A-I      intronic chr2:160576796(+) A-I      intronic chr2:160591228(+) A-I      intronic chr2:160573050(+) A-I      intronic chr2:160572066(+) A-I      intronic chr2:160591399(+) A-I      intronic chr2:160582854(+) A-I      intronic chr2:160575666(+) A-I      intronic chr2:160587465(+) A-I      intronic chr2:160587501(+) A-I      intronic chr2:160591434(+) A-I      intronic chr2:160613040(+) A-I      intronic chr2:160613571(+) A-I      intronic chr2:160600406(+) A-I      intronic chr2:160588037(+) A-I      intronic chr2:160586648(+) A-I      intronic chr2:160577503(+) A-I      intronic chr2:160591402(+) A-I      intronic chr2:160599185(+) A-I      intronic chr2:160589295(+) A-I      intronic chr2:160573014(+) A-I      intronic chr2:160597507(+) A-I      intronic chr2:160613118(+) A-I      intronic chr2:160594238(+) A-I      intronic chr2:160606767(+) A-I      intronic chr2:160592492(+) A-I      intronic chr2:160613641(+) A-I      intronic chr2:160576637(+) A-I      intronic chr2:160589317(+) A-I      intronic chr2:160572109(+) A-I      intronic chr2:160617822(+) A-I      intronic chr2:160613627(+) A-I      intronic chr2:160589807(+) A-I      intronic chr2:160573076(+) A-I      intronic chr2:160589127(+) A-I      intronic chr2:160602019(+) A-I      intronic chr2:160577563(+) A-I      intronic chr2:160616374(+) A-I      intronic chr2:160575672(+) A-I      intronic chr2:160614086(+) A-I      intronic chr2:160591250(+) A-I      intronic chr2:160591403(+) A-I      intronic chr2:160587441(+) A-I      intronic chr2:160612936(+) A-I      intronic chr2:160589163(+) A-I      intronic chr2:160589226(+) A-I      intronic chr2:160571997(+) A-I      intronic chr2:160613685(+) A-I      intronic chr2:160591435(+) A-I      intronic chr2:160577508(+) A-I      intronic chr2:160613607(+) A-I      intronic chr2:160612920(+) A-I      intronic chr2:160583874(+) A-I      intronic chr2:160606859(+) A-I      intronic chr2:160602046(+) A-I      intronic chr2:160589043(+) A-I      intronic chr2:160588521(+) A-I      intronic chr2:160573040(+) A-I      intronic chr2:160573007(+) A-I      intronic chr2:160591372(+) A-I      intronic chr2:160572095(+) A-I      intronic chr2:160587537(+) A-I      intronic chr2:160597822(+) A-I      intronic chr2:160588360(+) A-I      intronic chr2:160587425(+) A-I      intronic chr2:160589802(+) A-I      intronic chr2:160616348(+) A-I      intronic chr2:160582980(+) A-I      intronic chr2:160575586(+) A-I      intronic chr2:160592448(+) A-I      intronic chr2:160600344(+) A-I      intronic chr2:160599187(+) A-I      intronic chr2:160587605(+) A-I      intronic chr2:160589827(+) A-I      intronic chr2:160586087(+) A-I      intronic chr2:160576670(+) A-I      intronic chr2:160589063(+) A-I      intronic chr2:160586647(+) A-I      intronic chr2:160613473(+) A-I      intronic chr2:160589984(+) A-I      intronic chr2:160588171(+) A-I      intronic chr2:160588154(+) A-I      intronic chr2:160591448(+) A-I      intronic chr2:160576678(+) A-I      intronic chr2:160572042(+) A-I      intronic chr2:160576720(+) A-I      intronic chr2:160602952(+) A-I      intronic chr2:160589828(+) A-I      intronic chr2:160600313(+) A-I      intronic chr2:160606783(+) A-I      intronic chr2:160610068(+) A-I      intronic chr2:160600297(+) A-I      intronic chr2:160571958(+) A-I      intronic chr2:160588570(+) A-I      intronic chr2:160592558(+) A-I      intronic chr2:160572903(+) A-I      intronic chr2:160584011(+) A-I      intronic chr2:160607052(+) A-I      intronic chr2:160587614(+) A-I      intronic chr2:160589849(+) A-I      intronic chr2:160597769(+) A-I      intronic chr2:160584001(+) A-I      intronic chr2:160613701(+) A-I      intronic

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	MARCHF7	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-196a-1-3p
Interactor2: MARCHF7

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.