Detail Information

Basic Information:


  VIRBase ID:  

HHID00075783

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-196a-1-3p:           CD69:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-196a-1-3p CD69
miRBase
Accession/Entrez ID		 MIMAT0037307 969
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - AIM//BL-AC/P26//CLEC2C//EA1//GP32/28//MLR-3

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-196a-1-3p
rs1312793718 chr17:48632506    A/G
rs1408763134 chr17:48632499    G/A
rs186449583 chr17:48632497    G/A
rs751860800 chr17:48632495    TC/T
rs373603936 chr17:48632514    T/C
rs374872332 chr17:48632510    T/C
rs556956624 chr17:48632513    T/C
rs759524926 chr17:48632507    ATGT/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CD69
chr12:9909551(-) A-I      intronic
chr12:9909492(-) A-I      intronic
chr12:9909419(-) A-I      intronic
chr12:9909503(-) A-I      intronic
chr12:9911798(-) A-I      intronic
chr12:9909567(-) A-I      intronic
chr12:9909629(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CD69
chr12:9909419(-) A-G intron -    22484847
chr12:9909629(-) A-G intron -    22484847
chr12:9911760(-) G-A intron -    22484847
chr12:9911777(-) C-T intron -    22484847
chr12:9911798(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CD69
chr12:9905265-9905266(-) m6A 3'UTR       26404942
chr12:9905340-9905341(-) m6A 3'UTR       26404942
chr12:9905361-9905362(-) m6A 3'UTR       26404942
chr12:9905373-9905374(-) m6A 3'UTR       26404942
chr12:9905443-9905444(-) m6A 3'UTR       26404942
chr12:9905558-9905559(-) m6A 3'UTR       26404942
chr12:9905573-9905574(-) m6A 3'UTR       26404942
chr12:9905596-9905597(-) m6A 3'UTR       26404942
chr12:9905649-9905650(-) m6A 3'UTR       28052920//26404942
chr12:9905748-9905749(-) m6A 3'UTR       28052920//26404942
chr12:9905928-9905929(-) m6A 3'UTR       28052920//26404942//27773535//27371828
chr12:9905933-9905934(-) m6A 3'UTR       28052920//26404942//27773535//27371828
chr12:9905979-9905980(-) m6A 3'UTR       28052920//26404942//27773535//27371828
chr12:9906036-9906037(-) m6A 3'UTR       26404942
chr12:9906068-9906069(-) m6A 3'UTR       26404942
chr12:9906088-9906089(-) m6A CDS       26404942
chr12:9906143-9906144(-) m6A CDS       26404942
chr12:9913359-9913360(-) m6A CDS//exon       26404942//27371828
chr12:9913384-9913385(-) m6A CDS//exon       26404942//27371828
chr12:9913471-9913472(-) m6A 5'UTR//exon       26404942//27371828
chr12:9913494-9913495(-) m6A 5'UTR//exon       26404942//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CD69
Exosome Blood     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-196a-1-3p
Interactor2: CD69

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...