Basic Information:

  VIRBase ID:  

HHID00075770

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-103a-1-5p:  MIMAT0037306          NHLRC2:  NM_198514     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-103a-1-5p	NHLRC2
miRBase Accession/Entrez ID	MIMAT0037306	374354
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	FINCA

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-103a-1-5p	rs1031876357 chr5:168560948    G/A rs1257538371 chr5:168560953    G/A rs201456319 chr5:168560963    C/T rs763264678 chr5:168560952    T/C rs771317046 chr5:168560954    T/C rs773654610 chr5:168560950    A/C

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	NHLRC2	chr10:115675649(+) A-I      3'UTR chr10:115675599(+) A-I      3'UTR chr10:115675642(+) A-I      3'UTR chr10:115627361(+) A-I      intronic chr10:115675657(+) A-I      3'UTR chr10:115675663(+) A-I      3'UTR chr10:115675665(+) A-I      3'UTR chr10:115624907(+) A-I      intronic chr10:115624765(+) A-I      intronic chr10:115624225(+) A-I      intronic chr10:115624336(+) A-I      intronic chr10:115624248(+) A-I      intronic chr10:115624915(+) A-I      intronic chr10:115624301(+) A-I      intronic chr10:115624270(+) A-I      intronic chr10:115624838(+) A-I      intronic chr10:115624850(+) A-I      intronic chr10:115648807(+) A-I      intronic chr10:115624809(+) A-I      intronic chr10:115624303(+) A-I      intronic chr10:115624397(+) A-I      intronic chr10:115624388(+) A-I      intronic chr10:115624821(+) A-I      intronic chr10:115647731(+) A-I      intronic chr10:115621736(+) A-I      intronic chr10:115624281(+) A-I      intronic chr10:115624295(+) A-I      intronic chr10:115624363(+) A-I      intronic chr10:115621735(+) A-I      intronic chr10:115624848(+) A-I      intronic chr10:115624732(+) A-I      intronic chr10:115624201(+) A-I      intronic chr10:115624335(+) A-I      intronic chr10:115622644(+) A-I      intronic chr10:115624271(+) A-I      intronic chr10:115666584(+) A-I      intronic chr10:115647807(+) A-I      intronic chr10:115666560(+) A-I      intronic chr10:115675443(+) A-I      3'UTR chr10:115628720(+) A-I      intronic chr10:115631057(+) A-I      intronic chr10:115628722(+) A-I      intronic chr10:115628689(+) A-I      intronic chr10:115675666(+) A-I      3'UTR chr10:115670145(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	NHLRC2	chr10:115628689(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	NHLRC2	chr10:115614440-115614441(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:115614455-115614456(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:115614470-115614471(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:115614549-115614550(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:115614557-115614558(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr10:115614586-115614587(+) m6A 5'UTR//exon       24284625//24209618//25456834//24981863//22608085 chr10:115614629-115614630(+) m6A 5'UTR//exon       24209618//25456834//22608085 chr10:115614685-115614686(+) m6A CDS//exon       24209618 chr10:115614734-115614735(+) m6A CDS//exon       - chr10:115614782-115614783(+) m6A CDS//exon       24284625 chr10:115618301-115618302(+) m6A CDS//exon       24284625 chr10:115618311-115618312(+) m6A CDS//exon       24284625 chr10:115618468-115618469(+) m6A exon//intron       24981863 chr10:115636415-115636416(+) m6A CDS       24284625//24981863//22575960//22608085 chr10:115636454-115636455(+) m6A CDS       24284625//24981863//22575960//22608085 chr10:115636465-115636466(+) m6A CDS       24284625//24981863//22575960//22608085 chr10:115636493-115636494(+) m6A CDS       24284625//24981863//22575960//22608085 chr10:115636546-115636547(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:115636583-115636584(+) m6A CDS       24284625//24981863//22608085 chr10:115636642-115636643(+) m6A CDS       24284625//24981863//22608085 chr10:115636672-115636673(+) m6A CDS       24284625//24981863//22608085 chr10:115636679-115636680(+) m6A CDS       24284625//24981863//22608085 chr10:115636712-115636713(+) m6A CDS       24981863//22608085 chr10:115644132-115644133(+) m6A CDS       24981863 chr10:115664631-115664632(+) m6A CDS       24284625//24981863 chr10:115664638-115664639(+) m6A CDS       24284625//24981863 chr10:115664649-115664650(+) m6A CDS       24284625//24981863//22608085 chr10:115664707-115664708(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:115664721-115664722(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:115664732-115664733(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:115668060-115668061(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:115668086-115668087(+) m6A CDS       24284625//24209618//24981863//22608085 chr10:115668188-115668189(+) m6A CDS       24284625 chr10:115668373-115668374(+) m6A 3'UTR       24981863 chr10:115668951-115668952(+) m6A 3'UTR       24981863//22608085 chr10:115668972-115668973(+) m6A 3'UTR       24981863//22608085 chr10:115668989-115668990(+) m6A 3'UTR       24981863//22608085 chr10:115669076-115669077(+) m6A 3'UTR       24981863//22608085 chr10:115669084-115669085(+) m6A 3'UTR       24981863//22608085 chr10:115674950-115674951(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	NHLRC2	Chromatin K562 cells     - Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus Colon cancer cells     24393600 Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-103a-1-5p
Interactor2: NHLRC2

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.