Detail Information

Basic Information:


  VIRBase ID:  

HHID00075357

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-128-1-5p:           SNX13:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-128-1-5p SNX13
miRBase
Accession/Entrez ID		 MIMAT0026477 23161
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - RGS-PX1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-128-1-5p
rs1421580157 chr2:135665426    G/C
rs1484545550 chr2:135665425    T/C
rs759451365 chr2:135665421    G/A
rs762767177 chr2:135665411    C/T
rs117812383 chr2:135665418    G/A
rs1258427834 chr2:135665412    G/A
rs1258427834 chr2:135665412    G/C
rs1258427834 chr2:135665412    G/T
rs368374639 chr2:135665414    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SNX13
chr7:17855156(-) A-I      intronic
chr7:17966476(-) A-I      intronic
chr7:17967084(-) A-I      intronic
chr7:17966291(-) A-I      intronic
chr7:17966365(-) A-I      intronic
chr7:17952209(-) A-I      intronic
chr7:17964588(-) A-I      intronic
chr7:17966307(-) A-I      intronic
chr7:17966341(-) A-I      intronic
chr7:17855199(-) A-I      intronic
chr7:17966990(-) A-I      intronic
chr7:17966468(-) A-I      intronic
chr7:17876962(-) A-I      intronic
chr7:17951179(-) A-I      intronic
chr7:17966433(-) A-I      intronic
chr7:17951180(-) A-I      intronic
chr7:17967139(-) A-I      intronic
chr7:17966981(-) A-I      intronic
chr7:17952211(-) A-I      intronic
chr7:17967952(-) A-I      intronic
chr7:17916036(-) A-I      intronic
chr7:17859038(-) A-I      intronic
chr7:17967026(-) A-I      intronic
chr7:17952210(-) A-I      intronic
chr7:17964761(-) A-I      intronic
chr7:17966987(-) A-I      intronic
chr7:17918939(-) A-I      intronic
chr7:17856176(-) A-I      intronic
chr7:17952136(-) A-I      intronic
chr7:17951140(-) A-I      intronic
chr7:17859123(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SNX13
chr7:17951140(-) A-G intron -    22484847
chr7:17951179(-) A-G intron -    22484847
chr7:17951180(-) A-G intron -    22484847
chr7:17952307(-) A-G intron -    22484847
chr7:17964754(-) A-G intron -    22484847
chr7:17964823(-) A-G intron -    22484847
chr7:17966298(-) A-G intron -    22484847
chr7:17966387(-) A-G intron -    22484847
chr7:17966433(-) A-G intron -    22484847
chr7:17966468(-) A-G intron -    22484847
chr7:17966987(-) A-G intron -    22484847
chr7:17966990(-) A-G intron -    22484847
chr7:17967026(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SNX13
chr7:17830386-17830387(-) m6A 3'UTR       27773535
chr7:17830488-17830489(-) m6A 3'UTR       27773535
chr7:17832508-17832509(-) m6A 3'UTR       27773535
chr7:17832530-17832531(-) m6A 3'UTR       27773535
chr7:17832609-17832610(-) m6A 3'UTR       27773535
chr7:17833050-17833051(-) m6A 3'UTR       27773535
chr7:17833059-17833060(-) m6A 3'UTR       27773535
chr7:17833141-17833142(-) m6A 3'UTR       27773535
chr7:17833168-17833169(-) m6A 3'UTR       27773535
chr7:17833271-17833272(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr7:17833316-17833317(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr7:17833384-17833385(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr7:17833431-17833432(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr7:17833616-17833617(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr7:17833629-17833630(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//22575960//22608085
chr7:17833700-17833701(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr7:17833707-17833708(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr7:17833713-17833714(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr7:17833749-17833750(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr7:17833761-17833762(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr7:17833790-17833791(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr7:17833886-17833887(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22608085
chr7:17833982-17833983(-) m6A 3'UTR//intron       27773535
chr7:17938980-17938981(-) m6A exon//intron       27773535
chr7:17939161-17939162(-) m6A exon//intron       27773535
chr7:17939169-17939170(-) m6A exon//intron       27773535
chr7:17980028-17980029(-) m6A 5'UTR//exon       24981863
chr7:17980046-17980047(-) m6A 5'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-128-1-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
SNX13
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-128-1-5p
Interactor2: SNX13

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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