Detail Information

Basic Information:


  VIRBase ID:  

HHID00075064

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-365b-5p:           YRDC:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-365b-5p YRDC
miRBase
Accession/Entrez ID		 MIMAT0022833 79693
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - DRIP3//IRIP//SUA5

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-365b-5p
rs367566254 chr17:31575447    T/C
rs374487127 chr17:31575456    G/A
rs752977263 chr17:31575459    G/A
rs752977263 chr17:31575459    G/C
rs755134697 chr17:31575448    C/T
rs767877480 chr17:31575457    CTG/C
rs889256848 chr17:31575450    G/A
rs1245222811 chr17:31575440    G/A
rs1315675828 chr17:31575442    G/A
rs759650574 chr17:31575439    AG/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR YRDC
chr1:38272031(-) A-I      intronic
chr1:38272090(-) A-I      intronic
chr1:38272043(-) A-I      intronic
chr1:38272087(-) A-I      intronic
chr1:38272070(-) A-I      intronic
chr1:38272056(-) A-I      intronic
chr1:38272052(-) A-I      intronic
chr1:38270793(-) A-I      intronic
chr1:38270694(-) A-I      intronic
chr1:38270850(-) A-I      intronic
chr1:38271951(-) A-I      intronic
chr1:38270692(-) A-I      intronic
chr1:38270693(-) A-I      intronic
chr1:38272155(-) A-I      intronic
chr1:38270816(-) A-I      intronic
chr1:38271969(-) A-I      intronic
chr1:38270579(-) A-I      intronic
chr1:38270806(-) A-I      intronic
chr1:38270731(-) A-I      intronic
chr1:38272037(-) A-I      intronic
chr1:38272042(-) A-I      intronic
chr1:38270790(-) A-I      intronic
chr1:38270869(-) A-I      intronic
chr1:38270680(-) A-I      intronic
chr1:38272033(-) A-I      intronic
chr1:38270918(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED YRDC
chr1:38272033(-) A-I intron -    22327324
chr1:38270790(-) A-G intron -    22484847
chr1:38270869(-) A-G intron -    22484847
chr1:38272033(-) A-G intron -    22484847
chr1:38272037(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase YRDC
chr1:38268631-38268632(-) m6A 3'UTR       27773535
chr1:38268665-38268666(-) m6A 3'UTR       27773535
chr1:38268689-38268690(-) m6A 3'UTR       27773535
chr1:38268992-38268993(-) Am 3'UTR       -
chr1:38273653-38273654(-) m6A CDS       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-365b-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle cells     27563705
YRDC
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-365b-5p
Interactor2: YRDC

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...