Detail Information

Basic Information:


  VIRBase ID:  

HHID00075011

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-365b-5p:           SLC43A3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-365b-5p SLC43A3
miRBase
Accession/Entrez ID		 MIMAT0022833 29015
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - EEG1//ENBT1//FOAP-13//PRO1659//SEEEG-1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-365b-5p
rs367566254 chr17:31575447    T/C
rs374487127 chr17:31575456    G/A
rs752977263 chr17:31575459    G/A
rs752977263 chr17:31575459    G/C
rs755134697 chr17:31575448    C/T
rs767877480 chr17:31575457    CTG/C
rs889256848 chr17:31575450    G/A
rs1245222811 chr17:31575440    G/A
rs1315675828 chr17:31575442    G/A
rs759650574 chr17:31575439    AG/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC43A3
chr11:57191026(-) A-I      intronic
chr11:57185696(-) A-I      intronic
chr11:57191013(-) A-I      intronic
chr11:57185910(-) A-I      intronic
chr11:57185724(-) A-I      intronic
chr11:57181868(-) A-I      intronic
chr11:57185636(-) A-I      intronic
chr11:57190998(-) A-I      intronic
chr11:57191023(-) A-I      intronic
chr11:57185750(-) A-I      intronic
chr11:57185738(-) A-I      intronic
chr11:57190999(-) A-I      intronic
chr11:57187186(-) A-I      intronic
chr11:57185745(-) A-I      intronic
chr11:57185565(-) A-I      intronic
chr11:57191039(-) A-I      intronic
chr11:57186025(-) A-I      intronic
chr11:57185769(-) A-I      intronic
chr11:57191007(-) A-I      intronic
chr11:57185566(-) A-I      intronic
chr11:57187157(-) A-I      intronic
chr11:57175776(-) A-I      intronic
chr11:57187147(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC43A3
chr11:57174541-57174542(-) m6A 3'UTR//exon       25456834//24981863//28052920//27773535//27371828//22575960
chr11:57174774-57174775(-) m6A 3'UTR//exon       27371828//22575960
chr11:57174803-57174804(-) m6A 3'UTR//exon       27371828//22575960
chr11:57174993-57174994(-) m6A 3'UTR//exon       24209618//28052920//27773535//27371828//22575960
chr11:57175026-57175027(-) m6A 3'UTR//exon       24209618//25456834//24981863//28052920//27773535//27371828//22575960
chr11:57175042-57175043(-) m6A 3'UTR//exon       24209618//25456834//24981863//28052920//27773535//27371828//22575960
chr11:57175064-57175065(-) m6A 3'UTR//exon       24209618//25456834//24981863//28052920//27773535//27371828//22575960
chr11:57175129-57175130(-) m6A 3'UTR//exon       24209618//25456834//24981863//28052920//27773535//27371828//22575960
chr11:57175164-57175165(-) m6A 3'UTR//exon       24209618//24981863//28052920//27773535//27371828
chr11:57175184-57175185(-) m6A 3'UTR//exon       24209618//24981863//28052920//27773535//27371828
chr11:57175201-57175202(-) m6A 3'UTR//exon       24209618//24981863//28052920//27773535
chr11:57182090-57182091(-) m6A CDS       22575960
chr11:57182118-57182119(-) m6A CDS       22575960
chr11:57182128-57182129(-) m6A CDS       22575960
chr11:57182416-57182417(-) m6A CDS       22575960
chr11:57182550-57182551(-) m6A CDS       22575960
chr11:57182576-57182577(-) m6A CDS       22575960
chr11:57184086-57184087(-) m6A CDS//exon       22575960
chr11:57184102-57184103(-) m6A CDS//exon       22575960
chr11:57188529-57188530(-) m6A CDS//exon       27773535
chr11:57193038-57193039(-) m6A CDS//exon//intron       27773535//22575960
chr11:57193085-57193086(-) m6A CDS//exon//intron       27773535
chr11:57193142-57193143(-) m6A CDS//exon//intron       27773535//22575960
chr11:57193160-57193161(-) m6A CDS//intron       27773535//22575960
chr11:57193246-57193247(-) m6A 5'UTR//intron       22575960
chr11:57193501-57193502(-) m6A CDS//exon       22575960
chr11:57193681-57193682(-) m6A 5'UTR//exon       22575960
chr11:57193781-57193782(-) m6A 5'UTR//exon       27371828//22575960
chr11:57194219-57194220(-) m6A 5'UTR//intron       -
chr11:57194362-57194363(-) m6A 5'UTR//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-365b-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Skeletal muscle cells     27563705
SLC43A3
Chromatin K562 cells     -
Cytosol HeLa-S3 cells|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-365b-5p
Interactor2: SLC43A3

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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