Detail Information

Basic Information:


  VIRBase ID:  

HHID00074702

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3944-3p:           SAMD10:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3944-3p SAMD10
miRBase
Accession/Entrez ID		 MIMAT0018360 140700
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C20orf136//dJ591C20//dJ591C20.7

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3944-3p
rs1317952132 chr10:133371588    C/A
rs1420531459 chr10:133371580    C/T
rs963878056 chr10:133371579    C/A
rs998232021 chr10:133371581    G/A
rs1041667760 chr10:133371599    G/A
rs1417655091 chr10:133371597    C/T
rs977243435 chr10:133371595    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SAMD10
chr20:62607281(-) A-I      intronic
chr20:62607357(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SAMD10
chr20:62605681-62605682(-) m6A 3'UTR       27773535
chr20:62605728-62605729(-) m6A 3'UTR       24284625//27773535
chr20:62605767-62605768(-) m6A 3'UTR       24284625//27773535
chr20:62605816-62605817(-) m6A 3'UTR       24284625
chr20:62606167-62606168(-) m6A 3'UTR       27773535
chr20:62606188-62606189(-) m6A 3'UTR       27773535
chr20:62606211-62606212(-) m6A 3'UTR       27773535
chr20:62606537-62606538(-) m6A 3'UTR       -
chr20:62606560-62606561(-) m6A 3'UTR       -
chr20:62606623-62606624(-) m6A 3'UTR       -
chr20:62606690-62606691(-) m6A 3'UTR       25456834//27371828
chr20:62606723-62606724(-) m6A 3'UTR//exon       24284625//25456834//27371828
chr20:62606732-62606733(-) m6A 3'UTR//exon       24284625//25456834//27371828
chr20:62606771-62606772(-) m6A 3'UTR//exon       24284625//25456834//27371828
chr20:62606838-62606839(-) m6A 3'UTR//exon       24284625//25456834//27371828
chr20:62606844-62606845(-) m6A 3'UTR//exon       24284625//25456834//27371828
chr20:62608587-62608588(-) m6A CDS//exon       24284625//27371828
chr20:62608678-62608679(-) m6A CDS//exon       24284625//27371828//27773536
chr20:62608732-62608733(-) m6A CDS//exon       24284625//27371828
chr20:62609602-62609603(-) m6A CDS//exon//intron       27371828
chr20:62609630-62609631(-) m6A CDS//exon//intron       27371828
chr20:62611255-62611256(-) m6A exon       27371828
chr20:62611355-62611356(-) m6A exon       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3944-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
SAMD10
Exosome Blood     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3944-3p
Interactor2: SAMD10

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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