Detail Information

Basic Information:


  VIRBase ID:  

HHID00074632

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3934-5p:           CTSC:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3934-5p CTSC
miRBase
Accession/Entrez ID		 MIMAT0018349 1075
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CPPI//DPP-I//DPP1//DPPI//HMS//JP//JPD//PALS//PDON1//PLS

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3934-5p
rs1187981129 chr6:33698170    G/A
rs958509644 chr6:33698167    G/A
rs1268234776 chr6:33698153    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CTSC
chr11:88055590(-) A-I      3'UTR
chr11:88055585(-) A-I      3'UTR
chr11:88067529(-) A-I      intronic
chr11:88055681(-) A-I      3'UTR
chr11:88055592(-) A-I      3'UTR
chr11:88055562(-) A-I      3'UTR
chr11:88061978(-) A-I      intronic
chr11:88057427(-) A-I      3'UTR
chr11:88055686(-) A-I      3'UTR
chr11:88055560(-) A-I      3'UTR
chr11:88055554(-) A-I      3'UTR
chr11:88055550(-) A-I      3'UTR
chr11:88055549(-) A-I      3'UTR
chr11:88057461(-) A-I      3'UTR
chr11:88057416(-) A-I      3'UTR
chr11:88055547(-) A-I      3'UTR
chr11:88055542(-) A-I      3'UTR
chr11:88057400(-) A-I      3'UTR
chr11:88057395(-) A-I      3'UTR
chr11:88057381(-) A-I      3'UTR
chr11:88057431(-) A-I      3'UTR
chr11:88055534(-) A-I      3'UTR
chr11:88057432(-) A-I      3'UTR
chr11:88057399(-) A-I      3'UTR
chr11:88057417(-) A-I      3'UTR
chr11:88057380(-) A-I      3'UTR
chr11:88057337(-) A-I      3'UTR
chr11:88057333(-) A-I      3'UTR
chr11:88057328(-) A-I      3'UTR
chr11:88055691(-) A-I      3'UTR
chr11:88055596(-) A-I      3'UTR
chr11:88055619(-) A-I      3'UTR
chr11:88055620(-) A-I      3'UTR
chr11:88055628(-) A-I      3'UTR
chr11:88055670(-) A-I      3'UTR
chr11:88055673(-) A-I      3'UTR
chr11:88055675(-) A-I      3'UTR
chr11:88063155(-) A-I      intronic
chr11:88055540(-) A-I      3'UTR
chr11:88055685(-) A-I      3'UTR
chr11:88055694(-) A-I      3'UTR
chr11:88055703(-) A-I      3'UTR
chr11:88057335(-) A-I      3'UTR
chr11:88057396(-) A-I      3'UTR
chr11:88057406(-) A-I      3'UTR
chr11:88063641(-) A-I      intronic
chr11:88063602(-) A-I      intronic
chr11:88061972(-) A-I      intronic
chr11:88063744(-) A-I      intronic
chr11:88063063(-) A-I      intronic
chr11:88062536(-) A-I      intronic
chr11:88051901(-) A-I      intronic
chr11:88063088(-) A-I      intronic
chr11:88062528(-) A-I      intronic
chr11:88062461(-) A-I      intronic
chr11:88061905(-) A-I      intronic
chr11:88063685(-) A-I      intronic
chr11:88062502(-) A-I      intronic
chr11:88063699(-) A-I      intronic
chr11:88062017(-) A-I      intronic
chr11:88061902(-) A-I      intronic
chr11:88062458(-) A-I      intronic
chr11:88062445(-) A-I      intronic
chr11:88051990(-) A-I      intronic
chr11:88063811(-) A-I      intronic
chr11:88062405(-) A-I      intronic
chr11:88061960(-) A-I      intronic
chr11:88062433(-) A-I      intronic
chr11:88063762(-) A-I      intronic
chr11:88029400(-) A-I      NonSyn:Met->Val
chr11:88061965(-) A-I      intronic
chr11:88062581(-) A-I      intronic
chr11:88062432(-) A-I      intronic
chr11:88061963(-) A-I      intronic
chr11:88068742(-) A-I      intronic
chr11:88063686(-) A-I      intronic
chr11:88063655(-) A-I      intronic
chr11:88063055(-) A-I      intronic
chr11:88062487(-) A-I      intronic
chr11:88062506(-) A-I      intronic
chr11:88062501(-) A-I      intronic
chr11:88061973(-) A-I      intronic
chr11:88062550(-) A-I      intronic
chr11:88061996(-) A-I      intronic
chr11:88063681(-) A-I      intronic
chr11:88061998(-) A-I      intronic
chr11:88063059(-) A-I      intronic
chr11:88062024(-) A-I      intronic
chr11:88063801(-) A-I      intronic
chr11:88062622(-) A-I      intronic
chr11:88061975(-) A-I      intronic
chr11:88061964(-) A-I      intronic
chr11:88062621(-) A-I      intronic
chr11:88062567(-) A-I      intronic
chr11:88051965(-) A-I      intronic
chr11:88063749(-) A-I      intronic
chr11:88063654(-) A-I      intronic
chr11:88063694(-) A-I      intronic
chr11:88062484(-) A-I      intronic
chr11:88062565(-) A-I      intronic
chr11:88061936(-) A-I      intronic
chr11:88062568(-) A-I      intronic
chr11:88063693(-) A-I      intronic
chr11:88061907(-) A-I      intronic
chr11:88062538(-) A-I      intronic
chr11:88061934(-) A-I      intronic
chr11:88055563(-) A-I      3'UTR
chr11:88055556(-) A-I      3'UTR
chr11:88055689(-) A-I      3'UTR
chr11:88055621(-) A-I      3'UTR
chr11:88057439(-) A-I      3'UTR
chr11:88057440(-) A-I      3'UTR
chr11:88055588(-) A-I      3'UTR
chr11:88055597(-) A-I      3'UTR
chr11:88055564(-) A-I      3'UTR
chr11:88055578(-) A-I      3'UTR
chr11:88057446(-) A-I      3'UTR
chr11:88055634(-) A-I      3'UTR
chr11:88055688(-) A-I      3'UTR
chr11:88055555(-) A-I      3'UTR
chr11:88055582(-) A-I      3'UTR
chr11:88055679(-) A-I      3'UTR
chr11:88055579(-) A-I      3'UTR
chr11:88055690(-) A-I      3'UTR
chr11:88055699(-) A-I      3'UTR
chr11:88055613(-) A-I      3'UTR
chr11:88055583(-) A-I      3'UTR
chr11:88055700(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CTSC
chr11:88055583(-) A-I exon 3'UTR    22327324
chr11:88055613(-) A-I exon 3'UTR    21960545
chr11:88055699(-) A-I exon 3'UTR    21960545
chr11:88055583(-) A-G exon 3'UTR    22484847
chr11:88055700(-) A-G exon 3'UTR    22484847
chr11:88061934(-) A-G intron -    22484847
chr11:88061960(-) A-G intron -    22484847
chr11:88061963(-) A-G intron -    22484847
chr11:88061964(-) A-G intron -    22484847
chr11:88061965(-) A-G intron -    22484847
chr11:88061972(-) A-G intron -    22484847
chr11:88061973(-) A-G intron -    22484847
chr11:88061975(-) A-G intron -    22484847
chr11:88061996(-) A-G intron -    22484847
chr11:88061998(-) A-G intron -    22484847
chr11:88062017(-) A-G intron -    22484847
chr11:88062432(-) A-G intron -    22484847
chr11:88062484(-) A-G intron -    22484847
chr11:88062487(-) A-G intron -    22484847
chr11:88062501(-) A-G intron -    22484847
chr11:88062502(-) A-G intron -    22484847
chr11:88062538(-) A-G intron -    22484847
chr11:88062550(-) A-G intron -    22484847
chr11:88063744(-) A-G intron -    22484847
chr11:88063749(-) A-G intron -    22484847
chr11:88063762(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CTSC
chr11:88026811-88026812(-) m6A 3'UTR       27773535
chr11:88026864-88026865(-) m6A 3'UTR       27773535
chr11:88026870-88026871(-) m6A 3'UTR       27773535
chr11:88026901-88026902(-) m6A 3'UTR       27773535
chr11:88027033-88027034(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr11:88027100-88027101(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr11:88027107-88027108(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//22575960//22608085
chr11:88027232-88027233(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr11:88027285-88027286(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr11:88027381-88027382(-) m6A CDS//exon       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr11:88027558-88027559(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr11:88029351-88029352(-) m6A CDS//exon       27773535
chr11:88054658-88054659(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr11:88054666-88054667(-) m6A 3'UTR//intron       24981863//27773535
chr11:88054705-88054706(-) m6A 3'UTR//intron       24981863//27773535
chr11:88054712-88054713(-) m6A 3'UTR//intron       24981863//27773535
chr11:88054724-88054725(-) m6A 3'UTR//intron       24981863//27773535
chr11:88054759-88054760(-) m6A 3'UTR//intron       24981863//27773535
chr11:88054815-88054816(-) m6A 3'UTR//intron       24981863//27773535
chr11:88054821-88054822(-) m6A 3'UTR//intron       24981863//27773535
chr11:88054842-88054843(-) m6A 3'UTR//intron       24981863//27773535
chr11:88054876-88054877(-) m6A 3'UTR//intron       24981863
chr11:88054956-88054957(-) m6A 3'UTR//intron       24981863
chr11:88054982-88054983(-) m6A 3'UTR//intron       24981863
chr11:88055011-88055012(-) m6A 3'UTR//intron       24981863
chr11:88055095-88055096(-) m6A 3'UTR//intron       22608085
chr11:88055196-88055197(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr11:88055229-88055230(-) m6A 3'UTR//intron       22608085
chr11:88055233-88055234(-) m6A 3'UTR//intron       24981863
chr11:88055239-88055240(-) m6A 3'UTR//intron       24981863
chr11:88055290-88055291(-) m6A 3'UTR//intron       24981863
chr11:88055369-88055370(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr11:88055385-88055386(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr11:88055412-88055413(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr11:88055465-88055466(-) m6A 3'UTR//intron       24981863//27773535
chr11:88055497-88055498(-) m6A 3'UTR//intron       24981863//27773535
chr11:88055531-88055532(-) m6A 3'UTR//intron       24981863
chr11:88055546-88055547(-) m6A 3'UTR//intron       24981863
chr11:88055559-88055560(-) m6A 3'UTR//intron       24981863
chr11:88055612-88055613(-) m6A 3'UTR//intron       -
chr11:88059265-88059266(-) m6A 3'UTR//intron       24981863//28052920//27773535
chr11:88059346-88059347(-) m6A 3'UTR//intron       24284625//24981863//28052920//27773535//22608085
chr11:88059356-88059357(-) m6A 3'UTR//intron       24284625//24981863//28052920//27773535//22608085
chr11:88059375-88059376(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr11:88059382-88059383(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr11:88059397-88059398(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22608085
chr11:88059516-88059517(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr11:88059540-88059541(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr11:88059560-88059561(-) m6A 3'UTR//CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr11:88059573-88059574(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22608085
chr11:88059584-88059585(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr11:88061287-88061288(-) m6A CDS//exon//intron       24209618
chr11:88061321-88061322(-) m6A CDS//exon//intron       -
chr11:88070907-88070908(-) m6A 5'UTR//CDS//exon       24284625//25456834//24981863//27773535//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3934-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
CTSC
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3934-5p
Interactor2: CTSC

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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