Basic Information:

  VIRBase ID:  

HHID00074447

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3916:  MIMAT0018190          RBBP6:  NM_032626     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3916	RBBP6
miRBase Accession/Entrez ID	MIMAT0018190	5930
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	MY038//P2P-R//PACT//RBQ-1//SNAMA

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3916	rs1476085878 chr1:247202033    C/T rs979335578 chr1:247202024    C/A rs534993102 chr1:247202035    T/C

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RBBP6	chr16:24553916(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RBBP6	chr16:24549082-24549083(+) m6A 5'UTR       24981863 chr16:24550881-24550882(+) m6A 5'UTR//intron       24284625//24981863 chr16:24551111-24551112(+) m1A exon//intron       26863196//26863410 chr16:24551524-24551525(+) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:24551553-24551554(+) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:24551579-24551580(+) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:24551594-24551595(+) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:24551661-24551662(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:24551787-24551788(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085 chr16:24573168-24573169(+) m6A CDS//exon       24981863 chr16:24573185-24573186(+) m6A CDS//exon       24981863 chr16:24573194-24573195(+) m6A CDS//exon       24981863 chr16:24573233-24573234(+) m6A CDS//exon       24981863 chr16:24573250-24573251(+) m6A CDS//exon       24981863 chr16:24573284-24573285(+) m6A CDS//exon       24981863 chr16:24574802-24574803(+) m6A CDS//exon//intron       - chr16:24574982-24574983(+) m6A CDS//exon//intron       - chr16:24576126-24576127(+) m6A CDS//exon//intron       - chr16:24578471-24578472(+) m6A CDS//exon//intron       - chr16:24578506-24578507(+) m6A CDS//exon//intron       24284625//24981863 chr16:24580344-24580345(+) m6A CDS//exon//intron       24981863//27773535//22608085 chr16:24580381-24580382(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24580469-24580470(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24580566-24580567(+) m6A CDS//exon//intron       24284625//24981863//26404942//22608085 chr16:24580586-24580587(+) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//22608085 chr16:24580655-24580656(+) m6A CDS//exon//intron       24284625//24981863//26404942//27773535//22608085 chr16:24580688-24580689(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24580815-24580816(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24580859-24580860(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24580876-24580877(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24580896-24580897(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24580921-24580922(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24580977-24580978(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581024-24581025(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581043-24581044(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581065-24581066(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581118-24581119(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581130-24581131(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581178-24581179(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581206-24581207(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581215-24581216(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581269-24581270(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581304-24581305(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581314-24581315(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581319-24581320(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581348-24581349(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581420-24581421(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581461-24581462(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581517-24581518(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581541-24581542(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581565-24581566(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581590-24581591(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581603-24581604(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581640-24581641(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581653-24581654(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581690-24581691(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581700-24581701(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581739-24581740(+) m6A CDS//exon//intron       24284625//24981863//27773535//22608085 chr16:24581782-24581783(+) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22575960//22608085 chr16:24582242-24582243(+) m6A CDS//exon       24284625//25456834//24981863//27773535//22575960//22608085 chr16:24582257-24582258(+) m6A CDS//exon       24284625//25456834//24981863//27773535//22575960//22608085 chr16:24582418-24582419(+) m6A CDS//exon       24981863//27773535//22608085 chr16:24582567-24582568(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr16:24582593-24582594(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr16:24582630-24582631(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr16:24582638-24582639(+) Am CDS//exon       - chr16:24582648-24582649(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085 chr16:24582681-24582682(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr16:24582694-24582695(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr16:24582751-24582752(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:24582783-24582784(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:24582801-24582802(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:24582809-24582810(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:24582882-24582883(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:24582916-24582917(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr16:24582928-24582929(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr16:24582962-24582963(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr16:24583002-24583003(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr16:24583009-24583010(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr16:24583058-24583059(+) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085 chr16:24583119-24583120(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:24583144-24583145(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:24583172-24583173(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:24583231-24583232(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:24583255-24583256(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:24583280-24583281(+) m6A CDS//exon       24284625//24209618//24981863//26404942//27773535//22575960//22608085 chr16:24583300-24583301(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr16:24583305-24583306(+) m6A CDS//exon       24284625//24981863//26404942//27773535//22575960//22608085 chr16:24583365-24583366(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr16:24583377-24583378(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr16:24583419-24583420(+) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085 chr16:24583517-24583518(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr16:24583560-24583561(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr16:24583571-24583572(+) m1A CDS//exon       26863196 chr16:24583597-24583598(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr16:24583606-24583607(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr16:24583633-24583634(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr16:24583672-24583673(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr16:24583678-24583679(+) m6A CDS//exon       24284625//24981863//27773535//22608085 chr16:24583704-24583705(+) m6A CDS//exon       24981863//27773535//22608085 chr16:24583770-24583771(+) m6A 3'UTR//exon       24981863//27773535//22608085 chr16:24583865-24583866(+) m6A 3'UTR//exon       24981863//26404942//27773535//22608085 chr16:24583933-24583934(+) m6A 3'UTR//exon       24981863//26404942//27773535//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3916	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Urine     -
	RBBP6	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3916
Interactor2: RBBP6

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	CDS
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.