Detail Information

Basic Information:


  VIRBase ID:  

HHID00074375

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3691-5p:           DCP1A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3691-5p DCP1A
miRBase
Accession/Entrez ID		 MIMAT0018120 55802
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - HSA275986//Nbla00360//SMAD4IP1//SMIF

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3691-5p
rs370846725 chr6:5148291    G/A
rs370846725 chr6:5148291    G/C
rs886747228 chr6:5148290    C/T
rs1424314273 chr6:5148305    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR DCP1A
chr3:53372766(-) A-I      intronic
chr3:53331609(-) A-I      intronic
chr3:53331573(-) A-I      intronic
chr3:53323117(-) A-I      intronic
chr3:53323105(-) A-I      intronic
chr3:53331566(-) A-I      intronic
chr3:53331623(-) A-I      intronic
chr3:53351331(-) A-I      intronic
chr3:53351321(-) A-I      intronic
chr3:53366647(-) A-I      intronic
chr3:53365093(-) A-I      intronic
chr3:53365082(-) A-I      intronic
chr3:53365080(-) A-I      intronic
chr3:53364547(-) A-I      intronic
chr3:53364508(-) A-I      intronic
chr3:53364324(-) A-I      intronic
chr3:53362028(-) A-I      intronic
chr3:53362022(-) A-I      intronic
chr3:53357807(-) A-I      intronic
chr3:53357123(-) A-I      intronic
chr3:53357085(-) A-I      intronic
chr3:53357080(-) A-I      intronic
chr3:53356911(-) A-I      intronic
chr3:53356906(-) A-I      intronic
chr3:53356221(-) A-I      intronic
chr3:53352237(-) A-I      intronic
chr3:53352220(-) A-I      intronic
chr3:53341032(-) A-I      intronic
chr3:53352208(-) A-I      intronic
chr3:53352120(-) A-I      intronic
chr3:53352114(-) A-I      intronic
chr3:53352101(-) A-I      intronic
chr3:53351660(-) A-I      intronic
chr3:53351465(-) A-I      intronic
chr3:53351399(-) A-I      intronic
chr3:53351386(-) A-I      intronic
chr3:53351360(-) A-I      intronic
chr3:53351220(-) A-I      intronic
chr3:53349977(-) A-I      intronic
chr3:53349906(-) A-I      intronic
chr3:53349893(-) A-I      intronic
chr3:53349870(-) A-I      intronic
chr3:53349485(-) A-I      intronic
chr3:53349455(-) A-I      intronic
chr3:53349418(-) A-I      intronic
chr3:53366648(-) A-I      intronic
chr3:53366649(-) A-I      intronic
chr3:53366698(-) A-I      intronic
chr3:53342630(-) A-I      intronic
chr3:53366723(-) A-I      intronic
chr3:53349404(-) A-I      intronic
chr3:53368183(-) A-I      intronic
chr3:53368247(-) A-I      intronic
chr3:53368267(-) A-I      intronic
chr3:53369312(-) A-I      intronic
chr3:53366764(-) A-I      intronic
chr3:53369332(-) A-I      intronic
chr3:53369362(-) A-I      intronic
chr3:53369369(-) A-I      intronic
chr3:53369441(-) A-I      intronic
chr3:53370028(-) A-I      intronic
chr3:53370030(-) A-I      intronic
chr3:53370046(-) A-I      intronic
chr3:53370064(-) A-I      intronic
chr3:53370270(-) A-I      intronic
chr3:53370281(-) A-I      intronic
chr3:53370360(-) A-I      intronic
chr3:53372699(-) A-I      intronic
chr3:53372724(-) A-I      intronic
chr3:53366770(-) A-I      intronic
chr3:53366773(-) A-I      intronic
chr3:53372776(-) A-I      intronic
chr3:53372788(-) A-I      intronic
chr3:53374057(-) A-I      intronic
chr3:53374058(-) A-I      intronic
chr3:53374066(-) A-I      intronic
chr3:53374197(-) A-I      intronic
chr3:53374198(-) A-I      intronic
chr3:53375864(-) A-I      intronic
chr3:53375875(-) A-I      intronic
chr3:53375879(-) A-I      intronic
chr3:53375883(-) A-I      intronic
chr3:53375907(-) A-I      intronic
chr3:53375946(-) A-I      intronic
chr3:53375977(-) A-I      intronic
chr3:53343273(-) A-I      intronic
chr3:53342906(-) A-I      intronic
chr3:53342826(-) A-I      intronic
chr3:53366863(-) A-I      intronic
chr3:53366883(-) A-I      intronic
chr3:53367328(-) A-I      intronic
chr3:53367332(-) A-I      intronic
chr3:53342788(-) A-I      intronic
chr3:53342752(-) A-I      intronic
chr3:53342656(-) A-I      intronic
chr3:53349324(-) A-I      intronic
chr3:53341304(-) A-I      intronic
chr3:53341167(-) A-I      intronic
chr3:53341155(-) A-I      intronic
chr3:53341143(-) A-I      intronic
chr3:53341039(-) A-I      intronic
chr3:53348943(-) A-I      intronic
chr3:53340997(-) A-I      intronic
chr3:53340981(-) A-I      intronic
chr3:53339544(-) A-I      intronic
chr3:53339517(-) A-I      intronic
chr3:53339465(-) A-I      intronic
chr3:53337232(-) A-I      intronic
chr3:53331561(-) A-I      intronic
chr3:53348928(-) A-I      intronic
chr3:53348919(-) A-I      intronic
chr3:53347408(-) A-I      intronic
chr3:53347373(-) A-I      intronic
chr3:53347349(-) A-I      intronic
chr3:53343762(-) A-I      intronic
chr3:53343733(-) A-I      intronic
chr3:53343726(-) A-I      intronic
chr3:53343610(-) A-I      intronic
chr3:53343292(-) A-I      intronic
chr3:53343289(-) A-I      intronic
chr3:53343282(-) A-I      intronic
chr3:53323252(-) A-I      intronic
chr3:53323089(-) A-I      intronic
chr3:53323081(-) A-I      intronic
chr3:53323075(-) A-I      intronic
chr3:53368097(-) A-I      intronic
chr3:53322812(-) A-I      intronic
chr3:53366710(-) A-I      intronic
chr3:53341173(-) A-I      intronic
chr3:53341314(-) A-I      intronic
chr3:53343719(-) A-I      intronic
chr3:53351643(-) A-I      intronic
chr3:53357723(-) A-I      intronic
chr3:53346664(-) A-I      intronic
chr3:53375360(-) A-I      intronic
chr3:53366702(-) A-I      intronic
chr3:53323177(-) A-I      intronic
chr3:53323086(-) A-I      intronic
chr3:53340677(-) A-I      intronic
chr3:53375871(-) A-I      intronic
chr3:53342834(-) A-I      intronic
chr3:53343738(-) A-I      intronic
chr3:53356313(-) A-I      intronic
chr3:53352138(-) A-I      intronic
chr3:53343627(-) A-I      intronic
chr3:53335554(-) A-I      intronic
chr3:53370009(-) A-I      intronic
chr3:53323211(-) A-I      intronic
chr3:53323463(-) A-I      intronic
chr3:53342403(-) A-I      intronic
chr3:53372437(-) A-I      intronic
chr3:53349312(-) A-I      intronic
chr3:53356331(-) A-I      intronic
chr3:53334963(-) A-I      intronic
chr3:53368104(-) A-I      intronic
chr3:53364387(-) A-I      intronic
chr3:53343157(-) A-I      intronic
chr3:53364465(-) A-I      intronic
chr3:53375971(-) A-I      intronic
chr3:53351357(-) A-I      intronic
chr3:53332201(-) A-I      intronic
chr3:53343621(-) A-I      intronic
chr3:53348909(-) A-I      intronic
chr3:53341182(-) A-I      intronic
chr3:53372430(-) A-I      intronic
chr3:53366881(-) A-I      intronic
chr3:53372389(-) A-I      intronic
chr3:53332196(-) A-I      intronic
chr3:53364507(-) A-I      intronic
chr3:53375908(-) A-I      intronic
chr3:53368252(-) A-I      intronic
chr3:53368215(-) A-I      intronic
chr3:53323378(-) A-I      intronic
chr3:53330105(-) A-I      intronic
chr3:53349484(-) A-I      intronic
chr3:53330157(-) A-I      intronic
chr3:53349920(-) A-I      intronic
chr3:53348816(-) A-I      intronic
chr3:53351693(-) A-I      intronic
chr3:53374134(-) A-I      intronic
chr3:53332132(-) A-I      intronic
chr3:53342827(-) A-I      intronic
chr3:53323274(-) A-I      intronic
chr3:53357726(-) A-I      intronic
chr3:53368169(-) A-I      intronic
chr3:53342768(-) A-I      intronic
chr3:53331662(-) A-I      intronic
chr3:53337421(-) A-I      intronic
chr3:53367305(-) A-I      intronic
chr3:53347354(-) A-I      intronic
chr3:53340529(-) A-I      intronic
chr3:53348037(-) A-I      intronic
chr3:53375976(-) A-I      intronic
chr3:53351289(-) A-I      intronic
chr3:53348197(-) A-I      intronic
chr3:53367645(-) A-I      intronic
chr3:53332099(-) A-I      intronic
chr3:53342584(-) A-I      intronic
chr3:53367377(-) A-I      intronic
chr3:53375799(-) A-I      intronic
chr3:53342586(-) A-I      intronic
chr3:53332100(-) A-I      intronic
chr3:53375225(-) A-I      intronic
chr3:53356229(-) A-I      intronic
chr3:53341328(-) A-I      intronic
chr3:53323466(-) A-I      intronic
chr3:53332093(-) A-I      intronic
chr3:53340739(-) A-I      intronic
chr3:53341035(-) A-I      intronic
chr3:53365050(-) A-I      intronic
chr3:53332045(-) A-I      intronic
chr3:53364447(-) A-I      intronic
chr3:53323251(-) A-I      intronic
chr3:53341152(-) A-I      intronic
chr3:53342904(-) A-I      intronic
chr3:53367352(-) A-I      intronic
chr3:53364475(-) A-I      intronic
chr3:53331519(-) A-I      intronic
chr3:53341119(-) A-I      intronic
chr3:53340896(-) A-I      intronic
chr3:53356357(-) A-I      intronic
chr3:53367292(-) A-I      intronic
chr3:53342557(-) A-I      intronic
chr3:53368286(-) A-I      intronic
chr3:53343220(-) A-I      intronic
chr3:53352245(-) A-I      intronic
chr3:53342772(-) A-I      intronic
chr3:53342578(-) A-I      intronic
chr3:53374224(-) A-I      intronic
chr3:53367587(-) A-I      intronic
chr3:53348199(-) A-I      intronic
chr3:53323246(-) A-I      intronic
chr3:53332082(-) A-I      intronic
chr3:53348127(-) A-I      intronic
chr3:53332056(-) A-I      intronic
chr3:53331523(-) A-I      intronic
chr3:53368229(-) A-I      intronic
chr3:53331555(-) A-I      intronic
chr3:53321962(-) A-I      intronic
chr3:53323182(-) A-I      intronic
chr3:53340754(-) A-I      intronic
chr3:53351295(-) A-I      intronic
chr3:53365042(-) A-I      intronic
chr3:53347992(-) A-I      intronic
chr3:53356924(-) A-I      intronic
chr3:53342920(-) A-I      intronic
chr3:53348869(-) A-I      intronic
chr3:53343531(-) A-I      intronic
chr3:53374243(-) A-I      intronic
chr3:53342830(-) A-I      intronic
chr3:53351330(-) A-I      intronic
chr3:53338808(-) A-I      intronic
chr3:53367306(-) A-I      intronic
chr3:53364471(-) A-I      intronic
chr3:53331567(-) A-I      intronic
chr3:53340581(-) A-I      intronic
chr3:53349946(-) A-I      intronic
chr3:53346802(-) A-I      intronic
chr3:53323411(-) A-I      intronic
chr3:53343545(-) A-I      intronic
chr3:53356914(-) A-I      intronic
chr3:53375430(-) A-I      intronic
chr3:53331564(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED DCP1A
chr3:53331523(-) A-I intron -    21960545
chr3:53343719(-) A-I intron -    21960545
chr3:53322303(-) A-C exon CDS    21725310
chr3:53318575(-) C-A exon 3'UTR    22484847
chr3:53318576(-) T-A exon 3'UTR    22484847
chr3:53318577(-) C-A exon 3'UTR    22484847
chr3:53318647(-) G-A exon 3'UTR    22484847
chr3:53322970(-) A-G intron -    22484847
chr3:53322994(-) A-G intron -    22484847
chr3:53323412(-) A-G intron -    22484847
chr3:53330103(-) A-T intron -    22484847
chr3:53331519(-) A-G intron -    22484847
chr3:53332034(-) T-C intron -    22484847
chr3:53332101(-) T-C intron -    22484847
chr3:53332110(-) T-C intron -    22484847
chr3:53332162(-) A-G intron -    22484847
chr3:53332165(-) A-G intron -    22484847
chr3:53332196(-) A-G intron -    22484847
chr3:53332201(-) A-G intron -    22484847
chr3:53332217(-) A-G intron -    22484847
chr3:53338808(-) A-G intron -    22484847
chr3:53340543(-) A-G intron -    22484847
chr3:53340581(-) A-G intron -    22484847
chr3:53340677(-) A-G intron -    22484847
chr3:53340739(-) A-G intron -    22484847
chr3:53340754(-) A-G intron -    22484847
chr3:53341035(-) A-G intron -    22484847
chr3:53341117(-) A-G intron -    22484847
chr3:53341119(-) A-G intron -    22484847
chr3:53341127(-) A-G intron -    22484847
chr3:53341152(-) A-G intron -    22484847
chr3:53341156(-) A-G intron -    22484847
chr3:53341173(-) A-G intron -    22484847
chr3:53341182(-) A-G intron -    22484847
chr3:53342772(-) A-G intron -    22484847
chr3:53342827(-) A-G intron -    22484847
chr3:53342830(-) A-G intron -    22484847
chr3:53342903(-) A-G intron -    22484847
chr3:53343157(-) A-G intron -    22484847
chr3:53343220(-) A-G intron -    22484847
chr3:53343237(-) A-G intron -    22484847
chr3:53343301(-) A-G intron -    22484847
chr3:53343323(-) A-G intron -    22484847
chr3:53343325(-) A-G intron -    22484847
chr3:53343363(-) A-G intron -    22484847
chr3:53343627(-) A-G intron -    22484847
chr3:53343787(-) A-G intron -    22484847
chr3:53348697(-) G-A intron -    22484847
chr3:53349467(-) A-G intron -    22484847
chr3:53349481(-) A-G intron -    22484847
chr3:53349484(-) A-G intron -    22484847
chr3:53349920(-) A-G intron -    22484847
chr3:53351230(-) A-G intron -    22484847
chr3:53351295(-) A-G intron -    22484847
chr3:53351298(-) A-G intron -    22484847
chr3:53351330(-) A-G intron -    22484847
chr3:53351357(-) A-G intron -    22484847
chr3:53351464(-) A-G intron -    22484847
chr3:53351643(-) A-G intron -    22484847
chr3:53352113(-) A-G intron -    22484847
chr3:53352223(-) A-G intron -    22484847
chr3:53352224(-) A-G intron -    22484847
chr3:53352245(-) A-G intron -    22484847
chr3:53356313(-) A-G intron -    22484847
chr3:53356914(-) A-G intron -    22484847
chr3:53356924(-) A-G intron -    22484847
chr3:53357723(-) A-G intron -    22484847
chr3:53357726(-) A-G intron -    22484847
chr3:53357732(-) A-G intron -    22484847
chr3:53364387(-) A-G intron -    22484847
chr3:53364471(-) A-G intron -    22484847
chr3:53364475(-) A-G intron -    22484847
chr3:53364507(-) A-G intron -    22484847
chr3:53365042(-) A-G intron -    22484847
chr3:53366702(-) A-G intron -    22484847
chr3:53366881(-) A-G intron -    22484847
chr3:53366882(-) A-G intron -    22484847
chr3:53367376(-) A-G intron -    22484847
chr3:53367377(-) A-G intron -    22484847
chr3:53367587(-) A-G intron -    22484847
chr3:53368166(-) A-G intron -    22484847
chr3:53368286(-) A-G intron -    22484847
chr3:53372437(-) A-G intron -    22484847
chr3:53372632(-) A-G intron -    22484847
chr3:53374243(-) A-G intron -    22484847
chr3:53375360(-) A-G intron -    22484847
chr3:53375871(-) A-G intron -    22484847
chr3:53375908(-) A-G intron -    22484847
chr3:53375971(-) A-G intron -    22484847
chr3:53375976(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase DCP1A
chr3:53321104-53321105(-) m6A 3'UTR       27773535
chr3:53321148-53321149(-) m6A 3'UTR       27773535
chr3:53321259-53321260(-) m6A 3'UTR       24981863//27773535//22608085
chr3:53321476-53321477(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr3:53321519-53321520(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr3:53321532-53321533(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr3:53321554-53321555(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr3:53321613-53321614(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr3:53321619-53321620(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr3:53322203-53322204(-) m6A CDS//exon       27773535
chr3:53322222-53322223(-) m6A CDS//exon       27773535
chr3:53326160-53326161(-) m6A CDS       24284625//27773535//27371828
chr3:53326256-53326257(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr3:53326290-53326291(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr3:53326333-53326334(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr3:53326411-53326412(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr3:53326431-53326432(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr3:53326442-53326443(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr3:53326468-53326469(-) m6A CDS       24284625//24209618//24981863//27773535//27371828
chr3:53326664-53326665(-) m6A CDS       24284625//24981863//27773535//27371828
chr3:53326791-53326792(-) m6A CDS       24284625//27773535
chr3:53326808-53326809(-) m6A CDS       27773535
chr3:53326842-53326843(-) m6A CDS       27773535
chr3:53338241-53338242(-) m6A CDS//intron       27773535
chr3:53342438-53342439(-) Gm intron       -
chr3:53378947-53378948(-) m6A CDS       24284625//27371828
chr3:53378962-53378963(-) m6A CDS       24284625//27371828
chr3:53381461-53381462(-) m6A CDS       24284625//24981863//27773535//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3691-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
DCP1A
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3691-5p
Interactor2: DCP1A

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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