Detail Information

Basic Information:


  VIRBase ID:  

HHID00074336

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3691-5p:           SSR3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3691-5p SSR3
miRBase
Accession/Entrez ID		 MIMAT0018120 6747
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - TRAPG

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3691-5p
rs370846725 chr6:5148291    G/A
rs370846725 chr6:5148291    G/C
rs886747228 chr6:5148290    C/T
rs1424314273 chr6:5148305    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SSR3
chr3:156259404(-) A-I      3'UTR
chr3:156259371(-) A-I      3'UTR
chr3:156259257(-) A-I      3'UTR
chr3:156259275(-) A-I      3'UTR
chr3:156259286(-) A-I      3'UTR
chr3:156259300(-) A-I      3'UTR
chr3:156259318(-) A-I      3'UTR
chr3:156259417(-) A-I      3'UTR
chr3:156259450(-) A-I      3'UTR
chr3:156259292(-) A-I      3'UTR
chr3:156258150(-) A-I      3'UTR
chr3:156259314(-) A-I      3'UTR
chr3:156258236(-) A-I      3'UTR
chr3:156259381(-) A-I      3'UTR
chr3:156259398(-) A-I      3'UTR
chr3:156259385(-) A-I      3'UTR
chr3:156258213(-) A-I      3'UTR
chr3:156258152(-) A-I      3'UTR
chr3:156259378(-) A-I      3'UTR
chr3:156259380(-) A-I      3'UTR
chr3:156259379(-) A-I      3'UTR
chr3:156259373(-) A-I      3'UTR
chr3:156259372(-) A-I      3'UTR
chr3:156259356(-) A-I      3'UTR
chr3:156259335(-) A-I      3'UTR
chr3:156259311(-) A-I      3'UTR
chr3:156259309(-) A-I      3'UTR
chr3:156259308(-) A-I      3'UTR
chr3:156258151(-) A-I      3'UTR
chr3:156258391(-) A-I      3'UTR
chr3:156258348(-) A-I      3'UTR
chr3:156258332(-) A-I      3'UTR
chr3:156258286(-) A-I      3'UTR
chr3:156258246(-) A-I      3'UTR
chr3:156258276(-) A-I      3'UTR
chr3:156258271(-) A-I      3'UTR
chr3:156258257(-) A-I      3'UTR
chr3:156258255(-) A-I      3'UTR
chr3:156258247(-) A-I      3'UTR
chr3:156259367(-) A-I      3'UTR
chr3:156258319(-) A-I      3'UTR
chr3:156258227(-) A-I      3'UTR
chr3:156258308(-) A-I      3'UTR
chr3:156259370(-) A-I      3'UTR
chr3:156259317(-) A-I      3'UTR
chr3:156259397(-) A-I      3'UTR
chr3:156259406(-) A-I      3'UTR
chr3:156259295(-) A-I      3'UTR
chr3:156259324(-) A-I      3'UTR
chr3:156258393(-) A-I      3'UTR
chr3:156259299(-) A-I      3'UTR
chr3:156258283(-) A-I      3'UTR
chr3:156259229(-) A-I      3'UTR
chr3:156258389(-) A-I      3'UTR
chr3:156259288(-) A-I      3'UTR
chr3:156259363(-) A-I      3'UTR
chr3:156259341(-) A-I      3'UTR
chr3:156259340(-) A-I      3'UTR
chr3:156259396(-) A-I      3'UTR
chr3:156258230(-) A-I      3'UTR
chr3:156259331(-) A-I      3'UTR
chr3:156258205(-) A-I      3'UTR
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SSR3
chr3:156259229(-) A-I exon 3'UTR    21960545   //22327324
chr3:156258319(-) A-I exon 3'UTR    22327324
chr3:156258389(-) A-I exon 3'UTR    22327324
chr3:156259406(-) A-I exon 3'UTR    21960545
chr3:156259407(-) A-I exon 3'UTR    21960545
chr3:156259295(-) A-I exon 3'UTR    21960545
chr3:156259340(-) A-I exon 3'UTR    21960545
chr3:156259341(-) A-I exon 3'UTR    21960545
chr3:156259363(-) A-I exon 3'UTR    21960545
chr3:156259367(-) A-I exon 3'UTR    21960545
chr3:156258205(-) A-G exon 3'UTR    22484847
chr3:156258273(-) A-G exon 3'UTR    22484847
chr3:156258283(-) A-G exon 3'UTR    22484847
chr3:156258295(-) A-G exon 3'UTR    22484847
chr3:156258308(-) A-G exon 3'UTR    22484847
chr3:156258319(-) A-G exon 3'UTR    22484847
chr3:156258338(-) A-G exon 3'UTR    22484847
chr3:156258393(-) A-T exon 3'UTR    22484847
chr3:156258394(-) G-T exon 3'UTR    22484847
chr3:156259223(-) A-G exon 3'UTR    22484847
chr3:156259229(-) A-G exon 3'UTR    22484847
chr3:156259288(-) A-G exon 3'UTR    22484847
chr3:156259295(-) A-G exon 3'UTR    22484847
chr3:156259299(-) A-G exon 3'UTR    22484847
chr3:156259317(-) A-G exon 3'UTR    22484847
chr3:156259324(-) A-G exon 3'UTR    22484847
chr3:156259340(-) A-G exon 3'UTR    22484847
chr3:156259341(-) A-G exon 3'UTR    22484847
chr3:156259363(-) A-G exon 3'UTR    22484847
chr3:156259367(-) A-G exon 3'UTR    22484847
chr3:156259376(-) A-G exon 3'UTR    22484847
chr3:156259391(-) G-A exon 3'UTR    22484847
chr3:156259396(-) A-G exon 3'UTR    22484847
chr3:156259406(-) A-G exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SSR3
chr3:156257947-156257948(-) m6A 3'UTR       27773535
chr3:156258030-156258031(-) m6A 3'UTR       27773535
chr3:156258051-156258052(-) m6A 3'UTR       27773535
chr3:156258275-156258276(-) m6A 3'UTR       27773535
chr3:156258390-156258391(-) m6A 3'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3691-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
SSR3
Chromatin K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3691-5p
Interactor2: SSR3

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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