Detail Information

Basic Information:


  VIRBase ID:  

HHID00074197

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3681-3p:           SERBP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3681-3p SERBP1
miRBase
Accession/Entrez ID		 MIMAT0018109 26135
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CGI-55//CHD3IP//HABP4L//PAI-RBP1//PAIRBP1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3681-3p
rs1241688396 chr2:12199193    A/G
rs1244403771 chr2:12199189    C/T
rs1269036548 chr2:12199195    T/C
rs1417832580 chr2:12199182    C/T
rs528572715 chr2:12199186    A/G
rs528572715 chr2:12199186    A/T
rs769241421 chr2:12199190    A/C
rs928186369 chr2:12199177    C/G
rs928186369 chr2:12199177    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SERBP1
chr1:67874735(-) A-I      3'UTR
chr1:67874701(-) A-I      3'UTR
chr1:67874648(-) A-I      3'UTR
chr1:67879599(-) A-I      intronic
chr1:67879649(-) A-I      intronic
chr1:67883229(-) A-I      intronic
chr1:67879250(-) A-I      intronic
chr1:67879519(-) A-I      intronic
chr1:67879586(-) A-I      intronic
chr1:67882875(-) A-I      intronic
chr1:67879605(-) A-I      intronic
chr1:67884398(-) A-I      intronic
chr1:67879653(-) A-I      intronic
chr1:67879686(-) A-I      intronic
chr1:67879710(-) A-I      intronic
chr1:67881953(-) A-I      intronic
chr1:67882685(-) A-I      intronic
chr1:67882732(-) A-I      intronic
chr1:67883199(-) A-I      intronic
chr1:67883688(-) A-I      intronic
chr1:67883719(-) A-I      intronic
chr1:67883721(-) A-I      intronic
chr1:67883735(-) A-I      intronic
chr1:67883744(-) A-I      intronic
chr1:67883787(-) A-I      intronic
chr1:67883828(-) A-I      intronic
chr1:67883851(-) A-I      intronic
chr1:67883865(-) A-I      intronic
chr1:67883877(-) A-I      intronic
chr1:67883912(-) A-I      intronic
chr1:67884373(-) A-I      intronic
chr1:67879115(-) A-I      intronic
chr1:67879127(-) A-I      intronic
chr1:67874854(-) A-I      3'UTR
chr1:67874691(-) A-I      3'UTR
chr1:67874725(-) A-I      3'UTR
chr1:67874907(-) A-I      3'UTR
chr1:67874726(-) A-I      3'UTR
chr1:67879520(-) A-I      intronic
chr1:67883392(-) A-I      intronic
chr1:67884238(-) A-I      intronic
chr1:67881969(-) A-I      intronic
chr1:67883399(-) A-I      intronic
chr1:67888639(-) A-I      intronic
chr1:67883827(-) A-I      intronic
chr1:67883291(-) A-I      intronic
chr1:67884330(-) A-I      intronic
chr1:67883835(-) A-I      intronic
chr1:67879746(-) A-I      intronic
chr1:67879140(-) A-I      intronic
chr1:67874885(-) A-I      3'UTR
chr1:67879754(-) A-I      intronic
chr1:67882781(-) A-I      intronic
chr1:67883467(-) A-I      intronic
chr1:67879689(-) A-I      intronic
chr1:67874864(-) A-I      3'UTR
chr1:67883296(-) A-I      intronic
chr1:67882808(-) A-I      intronic
chr1:67874825(-) A-I      3'UTR
chr1:67883458(-) A-I      intronic
chr1:67883791(-) A-I      intronic
chr1:67883391(-) A-I      intronic
chr1:67882793(-) A-I      intronic
chr1:67883836(-) A-I      intronic
chr1:67874867(-) A-I      3'UTR
chr1:67882836(-) A-I      intronic
chr1:67883751(-) A-I      intronic
chr1:67879249(-) A-I      intronic
chr1:67884356(-) A-I      intronic
chr1:67883796(-) A-I      intronic
chr1:67879696(-) A-I      intronic
chr1:67879595(-) A-I      intronic
chr1:67883726(-) A-I      intronic
chr1:67883797(-) A-I      intronic
chr1:67879691(-) A-I      intronic
chr1:67888718(-) A-I      intronic
chr1:67874696(-) A-I      3'UTR
chr1:67884274(-) A-I      intronic
chr1:67879211(-) A-I      intronic
chr1:67884279(-) A-I      intronic
chr1:67879618(-) A-I      intronic
chr1:67884239(-) A-I      intronic
chr1:67883236(-) A-I      intronic
chr1:67883861(-) A-I      intronic
chr1:67884269(-) A-I      intronic
chr1:67883826(-) A-I      intronic
chr1:67879232(-) A-I      intronic
chr1:67879627(-) A-I      intronic
chr1:67879715(-) A-I      intronic
chr1:67883286(-) A-I      intronic
chr1:67879552(-) A-I      intronic
chr1:67879582(-) A-I      intronic
chr1:67884440(-) A-I      intronic
chr1:67874705(-) A-I      3'UTR
chr1:67879256(-) A-I      intronic
chr1:67874734(-) A-I      3'UTR
chr1:67884342(-) A-I      intronic
chr1:67879209(-) A-I      intronic
chr1:67884276(-) A-I      intronic
chr1:67883890(-) A-I      intronic
chr1:67883938(-) A-I      intronic
chr1:67879626(-) A-I      intronic
chr1:67874697(-) A-I      3'UTR
chr1:67874849(-) A-I      3'UTR
chr1:67879555(-) A-I      intronic
chr1:67883373(-) A-I      intronic
chr1:67879587(-) A-I      intronic
chr1:67874859(-) A-I      3'UTR
chr1:67883475(-) A-I      intronic
chr1:67879745(-) A-I      intronic
chr1:67883374(-) A-I      intronic
chr1:67882809(-) A-I      intronic
chr1:67883473(-) A-I      intronic
chr1:67884320(-) A-I      intronic
chr1:67874689(-) A-I      3'UTR
chr1:67881871(-) A-I      intronic
chr1:67874731(-) A-I      3'UTR
chr1:67882843(-) A-I      intronic
chr1:67889118(-) A-I      intronic
chr1:67884358(-) A-I      intronic
chr1:67882815(-) A-I      intronic
chr1:67879561(-) A-I      intronic
chr1:67883931(-) A-I      intronic
chr1:67882870(-) A-I      intronic
chr1:67879592(-) A-I      intronic
chr1:67884250(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SERBP1
chr1:67874849(-) A-I exon 3'UTR    15258596
chr1:67874859(-) A-I exon 3'UTR    15258596   //22327324
chr1:67874864(-) A-I exon 3'UTR    15258596
chr1:67874696(-) A-I exon 3'UTR    22327324
chr1:67874697(-) A-I exon 3'UTR    21960545   //22327324
chr1:67883296(-) A-I intron -    22327324
chr1:67874689(-) A-I exon 3'UTR    21960545
chr1:67874731(-) A-I exon 3'UTR    21960545
chr1:67874859(-) A-G exon 3'UTR    21725310   //22484847
chr1:67874689(-) A-G exon 3'UTR    22484847
chr1:67874696(-) A-G exon 3'UTR    22484847
chr1:67874697(-) A-G exon 3'UTR    22484847
chr1:67874705(-) A-G exon 3'UTR    22484847
chr1:67874731(-) A-G exon 3'UTR    22484847
chr1:67874734(-) A-G exon 3'UTR    22484847
chr1:67874825(-) A-G exon 3'UTR    22484847
chr1:67874849(-) A-G exon 3'UTR    22484847
chr1:67874885(-) A-G exon 3'UTR    22484847
chr1:67879211(-) A-G intron -    22484847
chr1:67879249(-) A-G intron -    22484847
chr1:67879592(-) A-G intron -    22484847
chr1:67879627(-) A-G intron -    22484847
chr1:67879745(-) A-G intron -    22484847
chr1:67879746(-) A-G intron -    22484847
chr1:67879754(-) A-G intron -    22484847
chr1:67882781(-) A-G intron -    22484847
chr1:67882793(-) A-G intron -    22484847
chr1:67882815(-) A-G intron -    22484847
chr1:67882836(-) A-G intron -    22484847
chr1:67882843(-) A-G intron -    22484847
chr1:67883198(-) G-A intron -    22484847
chr1:67883296(-) A-G intron -    22484847
chr1:67883751(-) A-G intron -    22484847
chr1:67883791(-) A-G intron -    22484847
chr1:67883796(-) A-G intron -    22484847
chr1:67883797(-) A-G intron -    22484847
chr1:67883826(-) A-G intron -    22484847
chr1:67883890(-) A-G intron -    22484847
chr1:67883938(-) A-G intron -    22484847
chr1:67884250(-) A-G intron -    22484847
chr1:67884274(-) A-G intron -    22484847
chr1:67884276(-) A-G intron -    22484847
chr1:67884279(-) A-G intron -    22484847
chr1:67884320(-) A-G intron -    22484847
chr1:67884330(-) A-G intron -    22484847
chr1:67884342(-) A-G intron -    22484847
chr1:67884356(-) A-G intron -    22484847
chr1:67884358(-) A-G intron -    22484847
chr1:67884454(-) A-T intron -    22484847
chr1:67888650(-) T-G intron -    22484847
chr1:67888651(-) T-A intron -    22484847
chr1:67888653(-) T-G intron -    22484847
chr1:67889071(-) G-C intron -    22484847
chr1:67889118(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SERBP1
chr1:67878731-67878732(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr1:67878758-67878759(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr1:67878787-67878788(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr1:67878853-67878854(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//22575960//22608085
chr1:67878874-67878875(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr1:67880856-67880857(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:67880870-67880871(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:67880936-67880937(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:67880996-67880997(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:67885538-67885539(-) m6A exon//intron       27773535
chr1:67885726-67885727(-) m1A CDS//exon       26863196
chr1:67885757-67885758(-) m6A CDS//exon       24981863//28052920//27773535
chr1:67885788-67885789(-) m6A CDS//exon       24981863//28052920//27773535
chr1:67885880-67885881(-) m6A exon//intron       24981863//28052920//27773535
chr1:67885888-67885889(-) m6A exon//intron       24981863//28052920//27773535
chr1:67886184-67886185(-) m6A exon//intron       24981863
chr1:67889894-67889895(-) m6A CDS//exon       24981863
chr1:67889911-67889912(-) m6A CDS//exon       24981863//27773535
chr1:67889928-67889929(-) m6A CDS//exon       24981863//27773535
chr1:67889980-67889981(-) m6A CDS//exon//intron       24981863//27773535
chr1:67890038-67890039(-) m6A exon//intron       24981863//28052920//27773535
chr1:67890061-67890062(-) m6A exon//intron       24981863//28052920//27773535
chr1:67890589-67890590(-) m6A CDS//exon       24981863//27773535//22575960
chr1:67890624-67890625(-) m6A CDS//exon       24209618//24981863//27773535//22575960
chr1:67891900-67891901(-) m6A CDS//exon       24209618//24981863//28052920//27773535//22575960
chr1:67891945-67891946(-) m6A CDS//exon       24209618//24981863//28052920//27773535//22575960
chr1:67891948-67891949(-) m1A CDS//exon       26863196
chr1:67895330-67895331(-) m6A exon//intron       25456834//24981863//27371828//27773536
chr1:67895744-67895745(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22575960
chr1:67895753-67895754(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22575960
chr1:67895779-67895780(-) m6A CDS       24209618//25456834//24981863//27371828//27773536//22575960
chr1:67895802-67895803(-) m6A CDS       24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr1:67895876-67895877(-) m6A CDS       24209618//24981863//27773535//27371828//27773536//22575960
chr1:67895906-67895907(-) m6A CDS       24209618//24981863//27773535//27371828//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3681-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
SERBP1
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus HCC cell line (HepG2)     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3681-3p
Interactor2: SERBP1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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