Detail Information

Basic Information:


  VIRBase ID:  

HHID00074147

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3681-3p:           PLAG1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3681-3p PLAG1
miRBase
Accession/Entrez ID		 MIMAT0018109 5324
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - PSA//SGPA//SRS4//ZNF912

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3681-3p
rs1241688396 chr2:12199193    A/G
rs1244403771 chr2:12199189    C/T
rs1269036548 chr2:12199195    T/C
rs1417832580 chr2:12199182    C/T
rs528572715 chr2:12199186    A/G
rs528572715 chr2:12199186    A/T
rs769241421 chr2:12199190    A/C
rs928186369 chr2:12199177    C/G
rs928186369 chr2:12199177    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PLAG1
chr8:57097328(-) A-I      intronic
chr8:57097359(-) A-I      intronic
chr8:57097364(-) A-I      intronic
chr8:57097480(-) A-I      intronic
chr8:57099378(-) A-I      intronic
chr8:57099404(-) A-I      intronic
chr8:57106448(-) A-I      intronic
chr8:57106718(-) A-I      intronic
chr8:57106741(-) A-I      intronic
chr8:57088773(-) A-I      intronic
chr8:57088778(-) A-I      intronic
chr8:57088811(-) A-I      intronic
chr8:57088839(-) A-I      intronic
chr8:57097313(-) A-I      intronic
chr8:57099151(-) A-I      intronic
chr8:57106429(-) A-I      intronic
chr8:57106322(-) A-I      intronic
chr8:57106396(-) A-I      intronic
chr8:57106446(-) A-I      intronic
chr8:57099028(-) A-I      intronic
chr8:57097462(-) A-I      intronic
chr8:57097296(-) A-I      intronic
chr8:57097202(-) A-I      intronic
chr8:57106447(-) A-I      intronic
chr8:57106794(-) A-I      intronic
chr8:57097468(-) A-I      intronic
chr8:57106754(-) A-I      intronic
chr8:57099207(-) A-I      intronic
chr8:57106705(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PLAG1
chr8:57097202(-) A-G intron -    22484847
chr8:57097462(-) A-G intron -    22484847
chr8:57097468(-) A-G intron -    22484847
chr8:57106446(-) A-G intron -    22484847
chr8:57106447(-) A-G intron -    22484847
chr8:57106793(-) A-G intron -    22484847
chr8:57106794(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PLAG1
chr8:57073622-57073623(-) m6A 3'UTR       27773535
chr8:57073644-57073645(-) m6A 3'UTR       27773535
chr8:57073726-57073727(-) m6A 3'UTR       27773535
chr8:57073754-57073755(-) m6A 3'UTR       27773535
chr8:57073929-57073930(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr8:57073970-57073971(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr8:57073981-57073982(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr8:57074020-57074021(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr8:57074061-57074062(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//22608085
chr8:57074139-57074140(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr8:57074158-57074159(-) m6A 3'UTR       24284625//25456834//24981863//27773535//22608085
chr8:57074210-57074211(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr8:57074273-57074274(-) m6A 3'UTR       27773535//22608085
chr8:57079069-57079070(-) m6A CDS//exon       27773535
chr8:57079114-57079115(-) m6A CDS//exon       24284625//27773535
chr8:57079257-57079258(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr8:57079339-57079340(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr8:57079438-57079439(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr8:57079453-57079454(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr8:57079476-57079477(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22608085
chr8:57079566-57079567(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr8:57079571-57079572(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr8:57079669-57079670(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr8:57079698-57079699(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr8:57079740-57079741(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr8:57079832-57079833(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr8:57079918-57079919(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr8:57080033-57080034(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr8:57080625-57080626(-) m6A CDS//exon//intron       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3681-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
PLAG1
Chromatin K562 cells     -
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3681-3p
Interactor2: PLAG1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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