Detail Information

Basic Information:


  VIRBase ID:  

HHID00074113

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3681-5p:           ADAT2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3681-5p ADAT2
miRBase
Accession/Entrez ID		 MIMAT0018108 134637
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - DEADC1//dJ20N2//dJ20N2.1//TAD2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3681-5p
rs1040681310 chr2:12199152    C/T
rs1045647749 chr2:12199156    G/C
rs1448564652 chr2:12199149    G/A
rs773395905 chr2:12199142    G/A
rs944609352 chr2:12199145    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ADAT2
chr6:143770843(-) A-I      intronic
chr6:143770842(-) A-I      intronic
chr6:143770844(-) A-I      intronic
chr6:143770848(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ADAT2
chr6:143764631(-) T-C intron -    22484847
chr6:143764797(-) T-C intron -    22484847
chr6:143764980(-) T-C intron -    22484847
chr6:143764981(-) C-T intron -    22484847
chr6:143764982(-) A-C intron -    22484847
chr6:143764983(-) A-T intron -    22484847
chr6:143764984(-) T-A intron -    22484847
chr6:143770847(-) A-G intron -    22484847
chr6:143771159(-) A-G intron -    22484847
chr6:143771171(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ADAT2
chr6:143746948-143746949(-) m6A 3'UTR       27773535
chr6:143746967-143746968(-) m6A 3'UTR       27773535
chr6:143747738-143747739(-) m6A 3'UTR       27773535//22608085
chr6:143747757-143747758(-) m6A 3'UTR       27773535//22608085
chr6:143747799-143747800(-) m6A 3'UTR       27773535
chr6:143747846-143747847(-) m6A 3'UTR       27773535
chr6:143747856-143747857(-) m6A 3'UTR       27773535
chr6:143748642-143748643(-) m6A 3'UTR       27773535
chr6:143748705-143748706(-) m6A 3'UTR       27773535//22608085
chr6:143748782-143748783(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143748813-143748814(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143748892-143748893(-) m6A 3'UTR       27773535//22608085
chr6:143748913-143748914(-) m6A 3'UTR       27773535
chr6:143748924-143748925(-) m6A 3'UTR       27773535
chr6:143748971-143748972(-) m6A 3'UTR       27773535
chr6:143749021-143749022(-) m6A 3'UTR       27773535
chr6:143749065-143749066(-) m6A 3'UTR       27773535
chr6:143749092-143749093(-) m6A 3'UTR       27773535//22608085
chr6:143749200-143749201(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143749214-143749215(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143749236-143749237(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143749253-143749254(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143749261-143749262(-) m6A 3'UTR       24981863//27773535//22608085
chr6:143749543-143749544(-) m6A 3'UTR       24981863//22608085
chr6:143749556-143749557(-) m6A 3'UTR       24981863//22608085
chr6:143749580-143749581(-) m6A 3'UTR       24981863//22608085
chr6:143749598-143749599(-) m6A 3'UTR       24981863//22608085
chr6:143749764-143749765(-) m6A CDS       -
chr6:143749775-143749776(-) m6A CDS       -
chr6:143771731-143771732(-) m6A CDS//exon       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3681-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
ADAT2
Chromatin K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3681-5p
Interactor2: ADAT2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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