Detail Information

Basic Information:


  VIRBase ID:  

HHID00073936

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3678-3p:           UBR4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3678-3p UBR4
miRBase
Accession/Entrez ID		 MIMAT0018103 23352
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - p600//RBAF600//ZUBR1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3678-3p
rs1163369708 chr17:75406153    G/A
rs1174219930 chr17:75406155    C/G
rs1273558782 chr17:75406157    G/A
rs1424776090 chr17:75406150    A/T
rs1475188526 chr17:75406151    C/T
rs755095016 chr17:75406158    G/T
rs915488824 chr17:75406156    C/A
rs915488824 chr17:75406156    C/T
rs988363493 chr17:75406137    C/T
rs753118178 chr17:75406141    A/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR UBR4
chr1:19529467(-) A-I      intronic
chr1:19458741(-) A-I      intronic
chr1:19458285(-) A-I      intronic
chr1:19463645(-) A-I      intronic
chr1:19530714(-) A-I      intronic
chr1:19485391(-) A-I      intronic
chr1:19485392(-) A-I      intronic
chr1:19530625(-) A-I      intronic
chr1:19506856(-) A-I      intronic
chr1:19457518(-) A-I      intronic
chr1:19529306(-) A-I      intronic
chr1:19530653(-) A-I      intronic
chr1:19485442(-) A-I      intronic
chr1:19530641(-) A-I      intronic
chr1:19529454(-) A-I      intronic
chr1:19458218(-) A-I      intronic
chr1:19486164(-) A-I      intronic
chr1:19530637(-) A-I      intronic
chr1:19510194(-) A-I      intronic
chr1:19457580(-) A-I      intronic
chr1:19529803(-) A-I      intronic
chr1:19486331(-) A-I      intronic
chr1:19485461(-) A-I      intronic
chr1:19510183(-) A-I      intronic
chr1:19458202(-) A-I      intronic
chr1:19485508(-) A-I      intronic
chr1:19457683(-) A-I      intronic
chr1:19486317(-) A-I      intronic
chr1:19458185(-) A-I      intronic
chr1:19485557(-) A-I      intronic
chr1:19529528(-) A-I      intronic
chr1:19486315(-) A-I      intronic
chr1:19486193(-) A-I      intronic
chr1:19529457(-) A-I      intronic
chr1:19529464(-) A-I      intronic
chr1:19486206(-) A-I      intronic
chr1:19458251(-) A-I      intronic
chr1:19458219(-) A-I      intronic
chr1:19530621(-) A-I      intronic
chr1:19529860(-) A-I      intronic
chr1:19529328(-) A-I      intronic
chr1:19506854(-) A-I      intronic
chr1:19458789(-) A-I      intronic
chr1:19456947(-) A-I      intronic
chr1:19458903(-) A-I      intronic
chr1:19458955(-) A-I      intronic
chr1:19463576(-) A-I      intronic
chr1:19529912(-) A-I      intronic
chr1:19457675(-) A-I      intronic
chr1:19530547(-) A-I      intronic
chr1:19529942(-) A-I      intronic
chr1:19458843(-) A-I      intronic
chr1:19532916(-) A-I      intronic
chr1:19532748(-) A-I      intronic
chr1:19457602(-) A-I      intronic
chr1:19508949(-) A-I      intronic
chr1:19530630(-) A-I      intronic
chr1:19485596(-) A-I      intronic
chr1:19529956(-) A-I      intronic
chr1:19529883(-) A-I      intronic
chr1:19485504(-) A-I      intronic
chr1:19457567(-) A-I      intronic
chr1:19507629(-) A-I      intronic
chr1:19532903(-) A-I      intronic
chr1:19457676(-) A-I      intronic
chr1:19458840(-) A-I      intronic
chr1:19457585(-) A-I      intronic
chr1:19529387(-) A-I      intronic
chr1:19419849(-) A-I      NonSyn:Asn->Ser
chr1:19534705(-) A-I      intronic
chr1:19532904(-) A-I      intronic
chr1:19458284(-) A-I      intronic
chr1:19457527(-) A-I      intronic
chr1:19506791(-) A-I      intronic
chr1:19485357(-) A-I      intronic
chr1:19529553(-) A-I      intronic
chr1:19529810(-) A-I      intronic
chr1:19458243(-) A-I      intronic
chr1:19458875(-) A-I      intronic
chr1:19458307(-) A-I      intronic
chr1:19458778(-) A-I      intronic
chr1:19529489(-) A-I      intronic
chr1:19530631(-) A-I      intronic
chr1:19486240(-) A-I      intronic
chr1:19533911(-) A-I      intronic
chr1:19486229(-) A-I      intronic
chr1:19529947(-) A-I      intronic
chr1:19533081(-) A-I      intronic
chr1:19529413(-) A-I      intronic
chr1:19530767(-) A-I      intronic
chr1:19458267(-) A-I      intronic
chr1:19506821(-) A-I      intronic
chr1:19485125(-) A-I      intronic
chr1:19485197(-) A-I      intronic
chr1:19486207(-) A-I      intronic
chr1:19458259(-) A-I      intronic
chr1:19507773(-) A-I      intronic
chr1:19458151(-) A-I      intronic
chr1:19458813(-) A-I      intronic
chr1:19529873(-) A-I      intronic
chr1:19485632(-) A-I      intronic
chr1:19485519(-) A-I      intronic
chr1:19457571(-) A-I      intronic
chr1:19485035(-) A-I      intronic
chr1:19458922(-) A-I      intronic
chr1:19458849(-) A-I      intronic
chr1:19460528(-) A-I      intronic
chr1:19458751(-) A-I      intronic
chr1:19529336(-) A-I      intronic
chr1:19485116(-) A-I      intronic
chr1:19458804(-) A-I      intronic
chr1:19506843(-) A-I      intronic
chr1:19457578(-) A-I      intronic
chr1:19506850(-) A-I      intronic
chr1:19458280(-) A-I      intronic
chr1:19458323(-) A-I      intronic
chr1:19485524(-) A-I      intronic
chr1:19485464(-) A-I      intronic
chr1:19530590(-) A-I      intronic
chr1:19508957(-) A-I      intronic
chr1:19506820(-) A-I      intronic
chr1:19456679(-) A-I      intronic
chr1:19458893(-) A-I      intronic
chr1:19529481(-) A-I      intronic
chr1:19485186(-) A-I      intronic
chr1:19530556(-) A-I      intronic
chr1:19529909(-) A-I      intronic
chr1:19458205(-) A-I      intronic
chr1:19458245(-) A-I      intronic
chr1:19458869(-) A-I      intronic
chr1:19493314(-) A-I      intronic
chr1:19458258(-) A-I      intronic
chr1:19486223(-) A-I      intronic
chr1:19458844(-) A-I      intronic
chr1:19507857(-) A-I      intronic
chr1:19530782(-) A-I      intronic
chr1:19529492(-) A-I      intronic
chr1:19457667(-) A-I      intronic
chr1:19457010(-) A-I      intronic
chr1:19485618(-) A-I      intronic
chr1:19457682(-) A-I      intronic
chr1:19532771(-) A-I      intronic
chr1:19530657(-) A-I      intronic
chr1:19530776(-) A-I      intronic
chr1:19486157(-) A-I      intronic
chr1:19530790(-) A-I      intronic
chr1:19485418(-) A-I      intronic
chr1:19485431(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED UBR4
chr1:19419849(-) A-I exon CDS    19478186
chr1:19511363(-) G-T intron -    22484847
chr1:19457527(-) A-G intron -    22484847
chr1:19457585(-) A-G intron -    22484847
chr1:19457602(-) A-G intron -    22484847
chr1:19457667(-) A-G intron -    22484847
chr1:19457675(-) A-G intron -    22484847
chr1:19457676(-) A-G intron -    22484847
chr1:19457682(-) A-G intron -    22484847
chr1:19458151(-) A-G intron -    22484847
chr1:19458205(-) A-G intron -    22484847
chr1:19458243(-) A-G intron -    22484847
chr1:19458245(-) A-G intron -    22484847
chr1:19458258(-) A-G intron -    22484847
chr1:19458259(-) A-G intron -    22484847
chr1:19458267(-) A-G intron -    22484847
chr1:19458280(-) A-G intron -    22484847
chr1:19458284(-) A-G intron -    22484847
chr1:19458307(-) A-G intron -    22484847
chr1:19458323(-) A-G intron -    22484847
chr1:19458751(-) A-G intron -    22484847
chr1:19458804(-) A-G intron -    22484847
chr1:19458813(-) A-G intron -    22484847
chr1:19458840(-) A-G intron -    22484847
chr1:19458869(-) A-G intron -    22484847
chr1:19458875(-) A-G intron -    22484847
chr1:19458922(-) A-G intron -    22484847
chr1:19460528(-) A-G intron -    22484847
chr1:19485464(-) A-G intron -    22484847
chr1:19485504(-) A-G intron -    22484847
chr1:19485519(-) A-G intron -    22484847
chr1:19485524(-) A-G intron -    22484847
chr1:19485596(-) A-G intron -    22484847
chr1:19485618(-) A-G intron -    22484847
chr1:19486157(-) A-G intron -    22484847
chr1:19486207(-) A-G intron -    22484847
chr1:19502840(-) A-C intron -    22484847
chr1:19506820(-) A-G intron -    22484847
chr1:19506843(-) A-G intron -    22484847
chr1:19506850(-) A-G intron -    22484847
chr1:19507773(-) A-G intron -    22484847
chr1:19507857(-) A-G intron -    22484847
chr1:19509940(-) C-T intron -    22484847
chr1:19512170(-) G-A intron -    22484847
chr1:19519444(-) A-T intron -    22484847
chr1:19529387(-) A-G intron -    22484847
chr1:19529481(-) A-G intron -    22484847
chr1:19529489(-) A-G intron -    22484847
chr1:19529492(-) A-G intron -    22484847
chr1:19529553(-) A-G intron -    22484847
chr1:19529810(-) A-G intron -    22484847
chr1:19529909(-) A-G intron -    22484847
chr1:19530590(-) A-G intron -    22484847
chr1:19530630(-) A-G intron -    22484847
chr1:19530631(-) A-G intron -    22484847
chr1:19530657(-) A-G intron -    22484847
chr1:19530776(-) A-G intron -    22484847
chr1:19530782(-) A-G intron -    22484847
chr1:19532748(-) A-G intron -    22484847
chr1:19533081(-) A-G intron -    22484847
chr1:19534867(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase UBR4
chr1:19401028-19401029(-) m6A 3'UTR//exon       27773535
chr1:19401338-19401339(-) m6A CDS//exon       27773535
chr1:19401347-19401348(-) m6A CDS//exon       27773535
chr1:19403260-19403261(-) m6A CDS//exon       27773535
chr1:19403290-19403291(-) m6A CDS//exon       27773535
chr1:19404338-19404339(-) m6A intron       27773535
chr1:19405878-19405879(-) m6A exon//intron       -
chr1:19408018-19408019(-) m6A CDS       24981863
chr1:19408037-19408038(-) m6A CDS       24981863
chr1:19408065-19408066(-) m6A CDS       24981863
chr1:19408156-19408157(-) m6A CDS//intron       24981863
chr1:19408500-19408501(-) m6A 5'UTR//intron       27773535
chr1:19408532-19408533(-) m6A 5'UTR//intron       27773535
chr1:19408547-19408548(-) m6A 5'UTR//intron       27773535
chr1:19408556-19408557(-) m6A 5'UTR//intron       27773535
chr1:19408578-19408579(-) m6A 5'UTR//intron       27773535
chr1:19408608-19408609(-) m6A 5'UTR//intron       27773535
chr1:19408676-19408677(-) m6A 5'UTR//intron       27773535
chr1:19411000-19411001(-) m6A CDS       27773535
chr1:19411075-19411076(-) m6A CDS       27773535
chr1:19411119-19411120(-) m6A CDS       27773535
chr1:19412679-19412680(-) m6A CDS       27773535
chr1:19413240-19413241(-) m6A CDS       27773535
chr1:19414377-19414378(-) Cm CDS       -
chr1:19414392-19414393(-) m6A CDS       24284625//24981863//28052920//27773535//27371828//27773536
chr1:19415320-19415321(-) m6A CDS       24981863//28052920//27773535//27371828//27773536
chr1:19415349-19415350(-) m6A CDS       24981863//27773535//27773536
chr1:19415363-19415364(-) m6A CDS       24981863//27773535//27773536
chr1:19415385-19415386(-) m6A CDS       24981863
chr1:19415398-19415399(-) m6A CDS       24981863
chr1:19415442-19415443(-) m6A CDS       -
chr1:19415458-19415459(-) m6A CDS       -
chr1:19419243-19419244(-) m6A exon//intron       -
chr1:19419905-19419906(-) m6A CDS//exon       27773535
chr1:19419938-19419939(-) m6A CDS//exon       27773535
chr1:19420581-19420582(-) Cm CDS//exon       -
chr1:19420583-19420584(-) m6A CDS//exon       27773536
chr1:19421403-19421404(-) m6A CDS//exon       27773536
chr1:19423061-19423062(-) m6A CDS//exon       24981863
chr1:19423697-19423698(-) m6A CDS//exon       24981863//27773535
chr1:19426912-19426913(-) m6A CDS       -
chr1:19426927-19426928(-) m6A CDS       -
chr1:19426981-19426982(-) m6A CDS       -
chr1:19427008-19427009(-) m6A CDS       -
chr1:19430601-19430602(-) Gm 5'UTR//CDS       -
chr1:19437323-19437324(-) m6A CDS//exon       27773535
chr1:19438142-19438143(-) m6A 3'UTR//intron       27773535
chr1:19438210-19438211(-) m6A 3'UTR//intron       27773535
chr1:19438227-19438228(-) m6A 3'UTR//intron       27773535
chr1:19439175-19439176(-) m6A 3'UTR//CDS//exon       27773535
chr1:19439285-19439286(-) m6A 3'UTR//CDS       27773535
chr1:19439315-19439316(-) Cm 3'UTR//CDS       -
chr1:19441317-19441318(-) Am CDS       -
chr1:19445374-19445375(-) m6A CDS       27773535
chr1:19445404-19445405(-) m6A CDS       27773535
chr1:19445411-19445412(-) m6A CDS       27773535
chr1:19446061-19446062(-) m6A CDS       27773535
chr1:19446070-19446071(-) m6A CDS       27773535
chr1:19446096-19446097(-) m6A CDS       27773535
chr1:19453057-19453058(-) Am CDS//exon       -
chr1:19455524-19455525(-) m6A CDS       24209618
chr1:19464528-19464529(-) m6A CDS       24209618//27773535//27371828//27773536//22575960
chr1:19464619-19464620(-) m6A CDS       24209618//27773535//27371828//27773536//22575960
chr1:19465599-19465600(-) m6A CDS       27773535//27371828//27773536//22575960
chr1:19465657-19465658(-) m6A CDS       24284625//27773535//27371828//27773536//22575960
chr1:19467305-19467306(-) m6A CDS//intron       24284625//27773535//27371828//27773536//22575960
chr1:19467348-19467349(-) m6A CDS//intron       24284625//27371828//27773536
chr1:19467848-19467849(-) m6A CDS       24284625//27371828//27773536
chr1:19467877-19467878(-) m6A CDS       27371828//27773536
chr1:19467888-19467889(-) m6A CDS       27371828//27773536
chr1:19467914-19467915(-) m6A CDS       27371828//27773536
chr1:19467996-19467997(-) m6A CDS       27773536//22575960
chr1:19468162-19468163(-) m6A CDS       27773536//22575960
chr1:19468176-19468177(-) m6A CDS       22575960
chr1:19468267-19468268(-) m6A CDS       22575960
chr1:19470516-19470517(-) m6A CDS       22575960
chr1:19473426-19473427(-) m6A CDS       22575960
chr1:19478923-19478924(-) m6A CDS//exon       27773535
chr1:19479806-19479807(-) m6A CDS//exon       27773535
chr1:19479883-19479884(-) m6A CDS//exon       27773535
chr1:19484418-19484419(-) m6A CDS//exon       27773535
chr1:19484429-19484430(-) m6A CDS//exon       27773535
chr1:19486711-19486712(-) m6A CDS//exon       27773535
chr1:19486743-19486744(-) m6A CDS//exon       27773535
chr1:19487414-19487415(-) m6A CDS//exon       27773535
chr1:19511738-19511739(-) m6A CDS       27773535
chr1:19513044-19513045(-) m6A CDS       27773535
chr1:19536671-19536672(-) m6A CDS       24981863//27371828//27773536//22575960
chr1:19536690-19536691(-) m6A CDS       24981863//27371828//27773536//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3678-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
UBR4
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3678-3p
Interactor2: UBR4

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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