Detail Information

Basic Information:


  VIRBase ID:  

HHID00073880

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3662:           SDE2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3662 SDE2
miRBase
Accession/Entrez ID		 MIMAT0018083 163859
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C1orf55//dJ671D7.1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3662
rs1269591251 chr6:134979367    C/T
rs1392974872 chr6:134979361    T/C
rs779534942 chr6:134979360    G/A
rs748588809 chr6:134979372    C/A
rs748588809 chr6:134979372    C/T
rs763349803 chr6:134979371    TC/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SDE2
chr1:226185301(-) A-I      intronic
chr1:226173964(-) A-I      intronic
chr1:226174882(-) A-I      intronic
chr1:226174883(-) A-I      intronic
chr1:226174901(-) A-I      intronic
chr1:226181563(-) A-I      intronic
chr1:226174850(-) A-I      intronic
chr1:226181568(-) A-I      intronic
chr1:226181986(-) A-I      intronic
chr1:226171349(-) A-I      3'UTR
chr1:226171334(-) A-I      3'UTR
chr1:226172277(-) A-I      3'UTR
chr1:226185665(-) A-I      intronic
chr1:226185405(-) A-I      intronic
chr1:226185398(-) A-I      intronic
chr1:226185321(-) A-I      intronic
chr1:226185310(-) A-I      intronic
chr1:226185304(-) A-I      intronic
chr1:226185299(-) A-I      intronic
chr1:226185268(-) A-I      intronic
chr1:226185263(-) A-I      intronic
chr1:226185693(-) A-I      intronic
chr1:226177230(-) A-I      intronic
chr1:226182601(-) A-I      intronic
chr1:226173847(-) A-I      intronic
chr1:226171262(-) A-I      3'UTR
chr1:226173908(-) A-I      intronic
chr1:226172503(-) A-I      3'UTR
chr1:226185766(-) A-I      intronic
chr1:226185746(-) A-I      intronic
chr1:226173935(-) A-I      intronic
chr1:226182659(-) A-I      intronic
chr1:226173947(-) A-I      intronic
chr1:226182633(-) A-I      intronic
chr1:226182709(-) A-I      intronic
chr1:226182650(-) A-I      intronic
chr1:226185279(-) A-I      intronic
chr1:226185392(-) A-I      intronic
chr1:226181582(-) A-I      intronic
chr1:226185295(-) A-I      intronic
chr1:226171340(-) A-I      3'UTR
chr1:226182597(-) A-I      intronic
chr1:226185427(-) A-I      intronic
chr1:226177297(-) A-I      intronic
chr1:226185259(-) A-I      intronic
chr1:226173819(-) A-I      intronic
chr1:226173812(-) A-I      intronic
chr1:226172464(-) A-I      3'UTR
chr1:226172255(-) A-I      3'UTR
chr1:226172322(-) A-I      3'UTR
chr1:226180134(-) A-I      NonSyn:Glu->Gly
chr1:226185291(-) A-I      intronic
chr1:226185745(-) A-I      intronic
chr1:226185334(-) A-I      intronic
chr1:226185627(-) A-I      intronic
chr1:226181673(-) A-I      intronic
chr1:226181665(-) A-I      intronic
chr1:226181581(-) A-I      intronic
chr1:226185374(-) A-I      intronic
chr1:226181916(-) A-I      intronic
chr1:226185671(-) A-I      intronic
chr1:226181608(-) A-I      intronic
chr1:226181957(-) A-I      intronic
chr1:226181845(-) A-I      intronic
chr1:226173867(-) A-I      intronic
chr1:226185311(-) A-I      intronic
chr1:226171362(-) A-I      3'UTR
chr1:226185300(-) A-I      intronic
chr1:226171400(-) A-I      3'UTR
chr1:226173938(-) A-I      intronic
chr1:226173925(-) A-I      intronic
chr1:226171826(-) A-I      3'UTR
chr1:226185227(-) A-I      intronic
chr1:226171280(-) A-I      3'UTR
chr1:226185791(-) A-I      intronic
chr1:226171865(-) A-I      3'UTR
chr1:226185228(-) A-I      intronic
chr1:226171341(-) A-I      3'UTR
chr1:226185336(-) A-I      intronic
chr1:226173960(-) A-I      intronic
chr1:226185790(-) A-I      intronic
chr1:226173837(-) A-I      intronic
chr1:226171378(-) A-I      3'UTR
chr1:226173873(-) A-I      intronic
chr1:226185161(-) A-I      intronic
chr1:226173895(-) A-I      intronic
chr1:226173939(-) A-I      intronic
chr1:226173850(-) A-I      intronic
chr1:226171377(-) A-I      3'UTR
chr1:226185597(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SDE2
chr1:226172339-226172340(-) m6A 3'UTR       24284625
chr1:226172938-226172939(-) m6A 3'UTR       27773535//22608085
chr1:226173065-226173066(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226173083-226173084(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226173122-226173123(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226173137-226173138(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226173173-226173174(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226173208-226173209(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226175623-226175624(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226175685-226175686(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226175697-226175698(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226175716-226175717(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226175746-226175747(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226175763-226175764(-) m1A CDS       26863196
chr1:226175775-226175776(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226175784-226175785(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226175843-226175844(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226175890-226175891(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226175906-226175907(-) m6A CDS       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085
chr1:226176066-226176067(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22575960//22608085
chr1:226176073-226176074(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22575960//22608085
chr1:226178983-226178984(-) m6A CDS       24981863//27773535//27371828//27773536//22575960//22608085
chr1:226180180-226180181(-) m6A CDS       27773535
chr1:226180249-226180250(-) m6A CDS       27773535
chr1:226180617-226180618(-) m6A CDS       27773535
chr1:226180658-226180659(-) m6A CDS       27773535
chr1:226182985-226182986(-) m6A CDS       27773535
chr1:226182991-226182992(-) m6A CDS       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3662
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
SDE2
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3662
Interactor2: SDE2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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