Detail Information

Basic Information:


  VIRBase ID:  

HHID00073874

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3662:           PUS10:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3662 PUS10
miRBase
Accession/Entrez ID		 MIMAT0018083 150962
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CCDC139//DOBI//Hup10

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3662
rs1269591251 chr6:134979367    C/T
rs1392974872 chr6:134979361    T/C
rs779534942 chr6:134979360    G/A
rs748588809 chr6:134979372    C/A
rs748588809 chr6:134979372    C/T
rs763349803 chr6:134979371    TC/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PUS10
chr2:61199109(-) A-I      intronic
chr2:61199134(-) A-I      intronic
chr2:61199150(-) A-I      intronic
chr2:61199102(-) A-I      intronic
chr2:61199098(-) A-I      intronic
chr2:61197151(-) A-I      intronic
chr2:61210245(-) A-I      intronic
chr2:61219354(-) A-I      intronic
chr2:61199121(-) A-I      intronic
chr2:61199115(-) A-I      intronic
chr2:61219239(-) A-I      intronic
chr2:61219207(-) A-I      intronic
chr2:61218286(-) A-I      intronic
chr2:61218241(-) A-I      intronic
chr2:61216882(-) A-I      intronic
chr2:61215945(-) A-I      intronic
chr2:61215944(-) A-I      intronic
chr2:61210634(-) A-I      intronic
chr2:61210631(-) A-I      intronic
chr2:61210611(-) A-I      intronic
chr2:61210597(-) A-I      intronic
chr2:61210579(-) A-I      intronic
chr2:61203090(-) A-I      intronic
chr2:61199601(-) A-I      intronic
chr2:61199231(-) A-I      intronic
chr2:61199208(-) A-I      intronic
chr2:61199154(-) A-I      intronic
chr2:61199141(-) A-I      intronic
chr2:61235117(-) A-I      intronic
chr2:61230848(-) A-I      intronic
chr2:61230847(-) A-I      intronic
chr2:61230520(-) A-I      intronic
chr2:61230414(-) A-I      intronic
chr2:61226703(-) A-I      intronic
chr2:61226630(-) A-I      intronic
chr2:61226559(-) A-I      intronic
chr2:61226558(-) A-I      intronic
chr2:61226499(-) A-I      intronic
chr2:61222203(-) A-I      intronic
chr2:61222163(-) A-I      intronic
chr2:61221153(-) A-I      intronic
chr2:61221103(-) A-I      intronic
chr2:61220509(-) A-I      intronic
chr2:61242712(-) A-I      intronic
chr2:61177827(-) A-I      intronic
chr2:61230475(-) A-I      intronic
chr2:61199094(-) A-I      intronic
chr2:61230497(-) A-I      intronic
chr2:61215949(-) A-I      intronic
chr2:61230963(-) A-I      intronic
chr2:61208546(-) A-I      intronic
chr2:61218689(-) A-I      intronic
chr2:61199483(-) A-I      intronic
chr2:61237733(-) A-I      3'UTR
chr2:61230796(-) A-I      intronic
chr2:61230863(-) A-I      intronic
chr2:61242725(-) A-I      intronic
chr2:61210780(-) A-I      intronic
chr2:61215946(-) A-I      intronic
chr2:61230855(-) A-I      intronic
chr2:61219426(-) A-I      intronic
chr2:61199144(-) A-I      intronic
chr2:61179386(-) A-I      intronic
chr2:61230860(-) A-I      intronic
chr2:61226762(-) A-I      intronic
chr2:61228687(-) A-I      intronic
chr2:61214865(-) A-I      intronic
chr2:61230795(-) A-I      intronic
chr2:61199207(-) A-I      intronic
chr2:61208307(-) A-I      intronic
chr2:61210749(-) A-I      intronic
chr2:61210765(-) A-I      intronic
chr2:61187448(-) A-I      intronic
chr2:61199143(-) A-I      intronic
chr2:61210725(-) A-I      intronic
chr2:61199060(-) A-I      intronic
chr2:61216023(-) A-I      intronic
chr2:61242722(-) A-I      intronic
chr2:61214841(-) A-I      intronic
chr2:61199602(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PUS10
chr2:61175563(-) T-C intron -    22484847
chr2:61179386(-) A-G intron -    22484847
chr2:61185833(-) T-C intron -    22484847
chr2:61186662(-) A-G intron -    22484847
chr2:61199143(-) A-G intron -    22484847
chr2:61199483(-) A-G intron -    22484847
chr2:61199602(-) A-G intron -    22484847
chr2:61208307(-) A-G intron -    22484847
chr2:61210725(-) A-G intron -    22484847
chr2:61210749(-) A-G intron -    22484847
chr2:61210765(-) A-G intron -    22484847
chr2:61210780(-) A-G intron -    22484847
chr2:61214865(-) A-G intron -    22484847
chr2:61216009(-) A-G intron -    22484847
chr2:61216023(-) A-G intron -    22484847
chr2:61218273(-) A-G intron -    22484847
chr2:61226678(-) A-G intron -    22484847
chr2:61226762(-) A-G intron -    22484847
chr2:61230431(-) A-G intron -    22484847
chr2:61230475(-) A-G intron -    22484847
chr2:61230497(-) A-G intron -    22484847
chr2:61230963(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PUS10
chr2:61169282-61169283(-) m6A 3'UTR//exon       27773535
chr2:61169287-61169288(-) m6A 3'UTR//exon       27773535
chr2:61175298-61175299(-) m6A CDS//exon       27773535
chr2:61180156-61180157(-) m6A CDS//exon       27773535
chr2:61180181-61180182(-) m6A CDS//exon       27773535
chr2:61180202-61180203(-) m6A CDS//exon       27773535
chr2:61180208-61180209(-) m6A CDS//exon       27773535
chr2:61180236-61180237(-) m6A CDS//exon       27773535
chr2:61181225-61181226(-) m6A CDS//exon       27773535
chr2:61236135-61236136(-) m6A 3'UTR//CDS//exon       27773535
chr2:61237085-61237086(-) m6A 3'UTR//intron       27773535
chr2:61237204-61237205(-) m6A 3'UTR//intron       27773535
chr2:61237480-61237481(-) m6A 3'UTR//intron       24209618
chr2:61237557-61237558(-) m6A 3'UTR//intron       24209618
chr2:61237654-61237655(-) m6A 3'UTR//intron       27773535
chr2:61237677-61237678(-) m6A 3'UTR//intron       27773535
chr2:61237768-61237769(-) m6A 3'UTR//intron       24209618//24981863//27773535//22608085
chr2:61237779-61237780(-) m6A 3'UTR//intron       24209618//24981863//27773535//22608085
chr2:61237804-61237805(-) m6A 3'UTR//intron       24209618//24981863//27773535//22608085
chr2:61237814-61237815(-) m6A 3'UTR//intron       24209618//24981863//27773535//22608085
chr2:61237901-61237902(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:61237909-61237910(-) m6A 3'UTR//intron       24981863//27773535//22608085
chr2:61237923-61237924(-) m6A 3'UTR//intron       27773535//22608085
chr2:61237943-61237944(-) m6A 3'UTR//intron       27773535//22608085
chr2:61239002-61239003(-) m6A CDS//exon       24981863
chr2:61244392-61244393(-) m6A 5'UTR//intron       24981863
chr2:61245159-61245160(-) m6A 5'UTR//exon       27773535
chr2:61245170-61245171(-) m6A 5'UTR//exon       27773535
chr2:61245233-61245234(-) m6A 5'UTR//exon       27773535
chr2:61245281-61245282(-) m6A 5'UTR//exon       24209618//27773535
chr2:61245330-61245331(-) m6A 5'UTR//exon       24209618//27773535
chr2:61245356-61245357(-) m6A 5'UTR//exon       24209618//27773535
chr2:61245385-61245386(-) m6A 5'UTR//exon       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3662
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
PUS10
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3662
Interactor2: PUS10

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...