Basic Information:

  VIRBase ID:  

HHID00073864

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3662:  MIMAT0018083          FAM241A:  NM_152400     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3662	FAM241A
miRBase Accession/Entrez ID	MIMAT0018083	132720
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	C4orf32

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3662	rs1269591251 chr6:134979367    C/T rs1392974872 chr6:134979361    T/C rs779534942 chr6:134979360    G/A rs748588809 chr6:134979372    C/A rs748588809 chr6:134979372    C/T rs763349803 chr6:134979371    TC/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FAM241A	chr4:113094068(+) A-I      intronic chr4:113094196(+) A-I      intronic chr4:113096774(+) A-I      intronic chr4:113075527(+) A-I      intronic chr4:113099711(+) A-I      intronic chr4:113099773(+) A-I      intronic chr4:113096777(+) A-I      intronic chr4:113096804(+) A-I      intronic chr4:113096844(+) A-I      intronic chr4:113096845(+) A-I      intronic chr4:113096856(+) A-I      intronic chr4:113094063(+) A-I      intronic chr4:113075541(+) A-I      intronic chr4:113075498(+) A-I      intronic chr4:113075504(+) A-I      intronic chr4:113075510(+) A-I      intronic chr4:113089907(+) A-I      intronic chr4:113089890(+) A-I      intronic chr4:113075910(+) A-I      intronic chr4:113099677(+) A-I      intronic chr4:113089920(+) A-I      intronic chr4:113089921(+) A-I      intronic chr4:113075563(+) A-I      intronic chr4:113099785(+) A-I      intronic chr4:113075934(+) A-I      intronic chr4:113087277(+) A-I      intronic chr4:113087282(+) A-I      intronic chr4:113099700(+) A-I      intronic chr4:113099706(+) A-I      intronic chr4:113075589(+) A-I      intronic chr4:113099775(+) A-I      intronic chr4:113099701(+) A-I      intronic chr4:113076115(+) A-I      intronic chr4:113096759(+) A-I      intronic chr4:113092894(+) A-I      intronic chr4:113075604(+) A-I      intronic chr4:113094307(+) A-I      intronic chr4:113092904(+) A-I      intronic chr4:113087397(+) A-I      intronic chr4:113076038(+) A-I      intronic chr4:113096830(+) A-I      intronic chr4:113076029(+) A-I      intronic chr4:113076110(+) A-I      intronic chr4:113076040(+) A-I      intronic chr4:113076030(+) A-I      intronic chr4:113076098(+) A-I      intronic chr4:113094156(+) A-I      intronic chr4:113092852(+) A-I      intronic chr4:113076111(+) A-I      intronic chr4:113094148(+) A-I      intronic chr4:113075450(+) A-I      intronic chr4:113076013(+) A-I      intronic chr4:113094306(+) A-I      intronic chr4:113087283(+) A-I      intronic chr4:113094173(+) A-I      intronic

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3662	Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     - Mitochondrion Cell line (HEK-293|HeLa)     22984580
	FAM241A	Chromatin K562 cells     - Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3662
Interactor2: FAM241A

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.