Detail Information

Basic Information:


  VIRBase ID:  

HHID00073854

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3662:           SLC2A13:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3662 SLC2A13
miRBase
Accession/Entrez ID		 MIMAT0018083 114134
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - HMIT

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3662
rs1269591251 chr6:134979367    C/T
rs1392974872 chr6:134979361    T/C
rs779534942 chr6:134979360    G/A
rs748588809 chr6:134979372    C/A
rs748588809 chr6:134979372    C/T
rs763349803 chr6:134979371    TC/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC2A13
chr12:40206366(-) A-I      intronic
chr12:40244866(-) A-I      intronic
chr12:40244871(-) A-I      intronic
chr12:40244872(-) A-I      intronic
chr12:40494521(-) A-I      intronic
chr12:40402291(-) A-I      intronic
chr12:40402318(-) A-I      intronic
chr12:40312933(-) A-I      intronic
chr12:40402220(-) A-I      intronic
chr12:40365655(-) A-I      intronic
chr12:40312911(-) A-I      intronic
chr12:40356143(-) A-I      intronic
chr12:40434443(-) A-I      intronic
chr12:40312809(-) A-I      intronic
chr12:40355999(-) A-I      intronic
chr12:40312921(-) A-I      intronic
chr12:40356096(-) A-I      intronic
chr12:40389652(-) A-I      intronic
chr12:40362246(-) A-I      intronic
chr12:40355575(-) A-I      intronic
chr12:40440974(-) A-I      intronic
chr12:40318624(-) A-I      intronic
chr12:40467927(-) A-I      intronic
chr12:40494622(-) A-I      intronic
chr12:40356097(-) A-I      intronic
chr12:40397695(-) A-I      intronic
chr12:40432417(-) A-I      intronic
chr12:40467884(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SLC2A13
chr12:40312933(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SLC2A13
chr12:40148873-40148874(-) m6A 3'UTR       27773535
chr12:40153643-40153644(-) m6A 3'UTR       27773535
chr12:40153776-40153777(-) m6A 3'UTR       27773535//22608085
chr12:40153795-40153796(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr12:40153985-40153986(-) m6A CDS       24981863//27773535//22608085
chr12:40154016-40154017(-) m6A CDS       24981863//27773535//22608085
chr12:40422217-40422218(-) m6A CDS       22608085
chr12:40499064-40499065(-) m6A CDS       27773536
chr12:40499093-40499094(-) m6A CDS       27773536
chr12:40499381-40499382(-) m6A CDS       24209618//27773536
chr12:40499422-40499423(-) m6A CDS       24209618//27773536
chr12:40499661-40499662(-) m6A 5'UTR       27371828//27773536
chr12:40499830-40499831(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3662
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
SLC2A13
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3662
Interactor2: SLC2A13

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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