Detail Information

Basic Information:


  VIRBase ID:  

HHID00073851

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3662:           ZC3HAV1L:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3662 ZC3HAV1L
miRBase
Accession/Entrez ID		 MIMAT0018083 92092
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C7orf39

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3662
rs1269591251 chr6:134979367    C/T
rs1392974872 chr6:134979361    T/C
rs779534942 chr6:134979360    G/A
rs748588809 chr6:134979372    C/A
rs748588809 chr6:134979372    C/T
rs763349803 chr6:134979371    TC/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ZC3HAV1L
chr7:138707240(-) A-I      intronic
chr7:138707245(-) A-I      intronic
chr7:138707246(-) A-I      intronic
chr7:138707253(-) A-I      intronic
chr7:138717788(-) A-I      intronic
chr7:138717782(-) A-I      intronic
chr7:138717736(-) A-I      intronic
chr7:138716280(-) A-I      intronic
chr7:138716207(-) A-I      intronic
chr7:138716110(-) A-I      intronic
chr7:138713845(-) A-I      intronic
chr7:138713887(-) A-I      intronic
chr7:138713913(-) A-I      intronic
chr7:138713922(-) A-I      intronic
chr7:138707230(-) A-I      intronic
chr7:138707144(-) A-I      Syn:Leu->Leu
chr7:138707210(-) A-I      intronic
chr7:138707209(-) A-I      intronic
chr7:138707127(-) A-I      NonSyn:Stp->Trp
chr7:138713924(-) A-I      intronic
chr7:138713953(-) A-I      intronic
chr7:138715345(-) A-I      intronic
chr7:138715393(-) A-I      intronic
chr7:138707180(-) A-I      intronic
chr7:138715461(-) A-I      intronic
chr7:138707709(-) A-I      intronic
chr7:138713846(-) A-I      intronic
chr7:138713986(-) A-I      intronic
chr7:138715388(-) A-I      intronic
chr7:138713816(-) A-I      intronic
chr7:138716159(-) A-I      intronic
chr7:138712435(-) A-I      intronic
chr7:138717872(-) A-I      intronic
chr7:138715943(-) A-I      intronic
chr7:138717845(-) A-I      intronic
chr7:138717807(-) A-I      intronic
chr7:138713942(-) A-I      intronic
chr7:138714005(-) A-I      intronic
chr7:138713877(-) A-I      intronic
chr7:138717350(-) A-I      intronic
chr7:138716168(-) A-I      intronic
chr7:138716539(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ZC3HAV1L
chr7:138713816(-) A-G intron -    22484847
chr7:138713846(-) A-G intron -    22484847
chr7:138713877(-) A-G intron -    22484847
chr7:138713986(-) A-G intron -    22484847
chr7:138715324(-) A-G intron -    22484847
chr7:138715388(-) A-G intron -    22484847
chr7:138715957(-) T-C intron -    22484847
chr7:138717350(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZC3HAV1L
chr7:138711209-138711210(-) m6A 3'UTR       24981863
chr7:138711216-138711217(-) m6A 3'UTR       24981863
chr7:138713529-138713530(-) m6A CDS       24284625//24981863
chr7:138713536-138713537(-) m6A CDS       24284625//24981863
chr7:138713591-138713592(-) m6A CDS       24284625//24981863
chr7:138713598-138713599(-) m6A CDS       24284625
chr7:138719337-138719338(-) m6A CDS       24284625
chr7:138720689-138720690(-) m6A CDS       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3662
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
ZC3HAV1L
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3662
Interactor2: ZC3HAV1L

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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