Detail Information

Basic Information:


  VIRBase ID:  

HHID00073847

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3662:           ABHD13:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3662 ABHD13
miRBase
Accession/Entrez ID		 MIMAT0018083 84945
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - bA153I24.2//BEM46L1//C13orf6

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3662
rs1269591251 chr6:134979367    C/T
rs1392974872 chr6:134979361    T/C
rs779534942 chr6:134979360    G/A
rs748588809 chr6:134979372    C/A
rs748588809 chr6:134979372    C/T
rs763349803 chr6:134979371    TC/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ABHD13
chr13:108874373(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ABHD13
chr13:108870779-108870780(+) m6A 5'UTR       25456834//24981863
chr13:108870874-108870875(+) m6A 5'UTR       24284625//25456834//24981863
chr13:108881591-108881592(+) m6A CDS       24284625//24981863//22575960//22608085
chr13:108881772-108881773(+) m6A CDS       24284625//24981863//26404942//22608085
chr13:108881828-108881829(+) m6A CDS       24284625//24981863//26404942//22608085
chr13:108881842-108881843(+) m6A CDS       24284625//24981863//26404942//22608085
chr13:108881891-108881892(+) m6A CDS       24284625//24981863//26404942//22608085
chr13:108882057-108882058(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr13:108882086-108882087(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:108882102-108882103(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:108882118-108882119(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chr13:108882215-108882216(+) m6A CDS       24284625//24209618//24981863//22608085
chr13:108882360-108882361(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:108882396-108882397(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr13:108882408-108882409(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr13:108882424-108882425(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr13:108882454-108882455(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr13:108882501-108882502(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr13:108882553-108882554(+) m6A CDS       24284625//24209618//25456834//24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3662
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
ABHD13
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3662
Interactor2: ABHD13

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...