Detail Information

Basic Information:


  VIRBase ID:  

HHID00073841

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3662:           PUS7L:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3662 PUS7L
miRBase
Accession/Entrez ID		 MIMAT0018083 83448
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3662
rs1269591251 chr6:134979367    C/T
rs1392974872 chr6:134979361    T/C
rs779534942 chr6:134979360    G/A
rs748588809 chr6:134979372    C/A
rs748588809 chr6:134979372    C/T
rs763349803 chr6:134979371    TC/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PUS7L
chr12:44143413(-) A-I      intronic
chr12:44141729(-) A-I      intronic
chr12:44126073(-) A-I      intronic
chr12:44126122(-) A-I      intronic
chr12:44126138(-) A-I      intronic
chr12:44129708(-) A-I      intronic
chr12:44129803(-) A-I      intronic
chr12:44141385(-) A-I      intronic
chr12:44141728(-) A-I      intronic
chr12:44141334(-) A-I      intronic
chr12:44137377(-) A-I      intronic
chr12:44133416(-) A-I      intronic
chr12:44137385(-) A-I      intronic
chr12:44126134(-) A-I      intronic
chr12:44141685(-) A-I      intronic
chr12:44129712(-) A-I      intronic
chr12:44129652(-) A-I      intronic
chr12:44133270(-) A-I      intronic
chr12:44133432(-) A-I      intronic
chr12:44133463(-) A-I      intronic
chr12:44141415(-) A-I      intronic
chr12:44129832(-) A-I      intronic
chr12:44129717(-) A-I      intronic
chr12:44133404(-) A-I      intronic
chr12:44141867(-) A-I      intronic
chr12:44129797(-) A-I      intronic
chr12:44133272(-) A-I      intronic
chr12:44141414(-) A-I      intronic
chr12:44126142(-) A-I      intronic
chr12:44126128(-) A-I      intronic
chr12:44143252(-) A-I      intronic
chr12:44133415(-) A-I      intronic
chr12:44133414(-) A-I      intronic
chr12:44133304(-) A-I      intronic
chr12:44141865(-) A-I      intronic
chr12:44126171(-) A-I      intronic
chr12:44126014(-) A-I      intronic
chr12:44129647(-) A-I      intronic
chr12:44129753(-) A-I      intronic
chr12:44128929(-) A-I      intronic
chr12:44129618(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PUS7L
chr12:44126014(-) A-G intron -    22484847
chr12:44126128(-) A-G intron -    22484847
chr12:44126134(-) A-G intron -    22484847
chr12:44126142(-) A-G intron -    22484847
chr12:44128929(-) A-G intron -    22484847
chr12:44129712(-) A-G intron -    22484847
chr12:44129717(-) A-G intron -    22484847
chr12:44129797(-) A-G intron -    22484847
chr12:44129832(-) A-G intron -    22484847
chr12:44141415(-) A-G intron -    22484847
chr12:44143252(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PUS7L
chr12:44112798-44112799(-) m6A 3'UTR       27773535
chr12:44112853-44112854(-) m6A 3'UTR       27773535
chr12:44112930-44112931(-) m6A 3'UTR       27773535
chr12:44113223-44113224(-) m6A 3'UTR       27773535
chr12:44113253-44113254(-) m6A 3'UTR       27773535
chr12:44113274-44113275(-) m6A 3'UTR       27773535
chr12:44113334-44113335(-) m6A 3'UTR       27773535
chr12:44113368-44113369(-) m6A 3'UTR       27773535
chr12:44113656-44113657(-) m6A 3'UTR       22608085
chr12:44113736-44113737(-) m6A 3'UTR       24981863//27773535//22608085
chr12:44113756-44113757(-) m6A 3'UTR       24981863//27773535
chr12:44113789-44113790(-) m6A 3'UTR       24981863//27773535
chr12:44113924-44113925(-) m6A 3'UTR       27773535
chr12:44114398-44114399(-) m6A 3'UTR       27773535
chr12:44114435-44114436(-) m6A 3'UTR       27773535
chr12:44114463-44114464(-) m6A 3'UTR       27773535
chr12:44114491-44114492(-) m6A 3'UTR       27773535
chr12:44114548-44114549(-) m6A 3'UTR       27773535
chr12:44114569-44114570(-) m6A 3'UTR       27773535
chr12:44114603-44114604(-) m6A 3'UTR       27773535
chr12:44114659-44114660(-) m6A 3'UTR       27773535
chr12:44114668-44114669(-) m6A 3'UTR       27773535
chr12:44124176-44124177(-) m6A 3'UTR       27773535//22608085
chr12:44124267-44124268(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr12:44124346-44124347(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr12:44124358-44124359(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr12:44124382-44124383(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr12:44124411-44124412(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr12:44124418-44124419(-) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr12:44124461-44124462(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr12:44130214-44130215(-) m6A CDS       24981863
chr12:44130263-44130264(-) m6A CDS       24981863
chr12:44130270-44130271(-) m6A CDS       24981863
chr12:44139888-44139889(-) m6A CDS       24981863
chr12:44139908-44139909(-) m6A CDS       24981863
chr12:44148273-44148274(-) m6A CDS//intron       24981863//27773535//22608085
chr12:44148284-44148285(-) m6A CDS//intron       24981863//27773535//22608085
chr12:44148329-44148330(-) m6A CDS//intron       24981863//27773535//22608085
chr12:44148335-44148336(-) m6A CDS//intron       24981863//27773535//22608085
chr12:44148346-44148347(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr12:44148433-44148434(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr12:44148454-44148455(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr12:44148473-44148474(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr12:44148539-44148540(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr12:44148580-44148581(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr12:44148594-44148595(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22608085
chr12:44148651-44148652(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr12:44148705-44148706(-) m6A CDS//intron       24981863//27773535//22608085
chr12:44148794-44148795(-) m6A CDS//intron       24981863//27773535//22608085
chr12:44148832-44148833(-) m6A CDS//intron       24981863//27773535//22608085
chr12:44148838-44148839(-) m6A CDS//intron       24981863//27773535//22608085
chr12:44148903-44148904(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr12:44148919-44148920(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr12:44148925-44148926(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr12:44152183-44152184(-) m6A 5'UTR//intron       -
chr12:44152258-44152259(-) m6A 5'UTR//intron       27773535
chr12:44152325-44152326(-) m6A 5'UTR//intron       24209618//27773535//22608085
chr12:44152353-44152354(-) m6A 5'UTR//intron       24209618//24981863//27773535//22608085
chr12:44152381-44152382(-) m6A 5'UTR//intron       24209618//24981863//27773535//22608085
chr12:44152400-44152401(-) m6A 5'UTR//intron       24209618//24981863//27773535//22608085
chr12:44152537-44152538(-) m6A 5'UTR       24981863
chr12:44152594-44152595(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3662
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
Mitochondrion Cell line (HEK-293|HeLa)     22984580
PUS7L
Chromatin K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3662
Interactor2: PUS7L

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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